Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 MIR19B1-201ENST00000384829 87 ntBASIC0.37□□□□□ -2.35
TNFP01375 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
TNFP01375 RNU6-360P-201ENST00000390944 104 ntBASIC0.37□□□□□ -2.35
TNFP01375 RPL21P111-201ENST00000418453 477 ntBASIC0.37□□□□□ -2.35
TNFP01375 AC010099.3-201ENST00000423896 409 ntBASIC0.37□□□□□ -2.35
TNFP01375 SNRPEP7-201ENST00000438350 220 ntBASIC0.37□□□□□ -2.35
TNFP01375 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.37□□□□□ -2.35
TNFP01375 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC0.37□□□□□ -2.35
TNFP01375 MTND1P16-201ENST00000465177 898 ntBASIC0.37□□□□□ -2.35
TNFP01375 RNU4-57P-201ENST00000515980 135 ntBASIC0.37□□□□□ -2.35
TNFP01375 RNU5B-3P-201ENST00000516601 115 ntBASIC0.37□□□□□ -2.35
TNFP01375 AP003355.1-201ENST00000518956 587 ntBASIC0.37□□□□□ -2.35
TNFP01375 AP003072.2-201ENST00000527756 676 ntBASIC0.37□□□□□ -2.35
TNFP01375 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.37□□□□□ -2.35
TNFP01375 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC0.37□□□□□ -2.35
TNFP01375 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.37□□□□□ -2.35
TNFP01375 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.37□□□□□ -2.35
TNFP01375 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.37□□□□□ -2.35
TNFP01375 BNIP3P16-201ENST00000589779 534 ntBASIC0.37□□□□□ -2.35
TNFP01375 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.37□□□□□ -2.35
TNFP01375 AC022387.2-201ENST00000604050 448 ntBASIC0.37□□□□□ -2.35
TNFP01375 AC107952.2-201ENST00000606048 486 ntBASIC0.37□□□□□ -2.35
TNFP01375 AL118556.2-201ENST00000614375 824 ntBASIC0.37□□□□□ -2.35
TNFP01375 AL138955.1-201ENST00000622881 1040 ntBASIC0.37□□□□□ -2.35
TNFP01375 AC068787.1-201ENST00000623908 691 ntBASIC0.37□□□□□ -2.35
TNFP01375 PCF11-AS1-201ENST00000602322 1516 ntBASIC0.37□□□□□ -2.35
TNFP01375 AC121333.1-201ENST00000567488 2709 ntBASIC0.36□□□□□ -2.35
TNFP01375 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
TNFP01375 SNORD114-19-201ENST00000363072 75 ntBASIC0.36□□□□□ -2.35
TNFP01375 RNU6-160P-201ENST00000384591 107 ntBASIC0.36□□□□□ -2.35
TNFP01375 RNU6-296P-201ENST00000384608 107 ntBASIC0.36□□□□□ -2.35
TNFP01375 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC0.36□□□□□ -2.35
TNFP01375 MTATP6P27-201ENST00000416987 621 ntBASIC0.36□□□□□ -2.35
TNFP01375 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.36□□□□□ -2.35
TNFP01375 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.36□□□□□ -2.35
TNFP01375 OR6C5P-201ENST00000452388 923 ntBASIC0.36□□□□□ -2.35
TNFP01375 RNA5SP269-201ENST00000459032 137 ntBASIC0.36□□□□□ -2.35
TNFP01375 RNU6-1092P-201ENST00000516955 87 ntBASIC0.36□□□□□ -2.35
TNFP01375 RNA5SP503-201ENST00000517047 117 ntBASIC0.36□□□□□ -2.35
TNFP01375 AC091057.3-201ENST00000602684 733 ntBASIC0.36□□□□□ -2.35
TNFP01375 AC073410.2-201ENST00000603240 332 ntBASIC0.36□□□□□ -2.35
TNFP01375 AL133445.2-201ENST00000611191 527 ntBASIC0.36□□□□□ -2.35
TNFP01375 U6.101-201ENST00000637707 76 ntBASIC0.36□□□□□ -2.35
TNFP01375 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
TNFP01375 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.35□□□□□ -2.35
TNFP01375 RNU6-252P-201ENST00000363232 107 ntBASIC0.35□□□□□ -2.35
TNFP01375 MIR605-201ENST00000385078 83 ntBASIC0.35□□□□□ -2.35
TNFP01375 RNA5SP511-201ENST00000410487 115 ntBASIC0.35□□□□□ -2.35
TNFP01375 TRIM60P5Y-201ENST00000413946 574 ntBASIC0.35□□□□□ -2.35
TNFP01375 AC114482.1-201ENST00000418010 247 ntBASIC0.35□□□□□ -2.35
TNFP01375 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.35□□□□□ -2.35
TNFP01375 RPL36AP53-201ENST00000432891 316 ntBASIC0.35□□□□□ -2.35
TNFP01375 HSPE1P9-201ENST00000440046 311 ntBASIC0.35□□□□□ -2.35
TNFP01375 VN1R10P-201ENST00000447106 875 ntBASIC0.35□□□□□ -2.35
TNFP01375 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.35□□□□□ -2.35
TNFP01375 RPL7P43-201ENST00000478876 753 ntBASIC0.35□□□□□ -2.35
TNFP01375 AC008628.1-201ENST00000508663 265 ntBASIC0.35□□□□□ -2.35
TNFP01375 AC093259.1-201ENST00000509755 300 ntBASIC0.35□□□□□ -2.35
TNFP01375 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.35□□□□□ -2.35
TNFP01375 RNU2-53P-201ENST00000516257 147 ntBASIC0.35□□□□□ -2.35
TNFP01375 RNU6-965P-201ENST00000516721 96 ntBASIC0.35□□□□□ -2.35
TNFP01375 SNORA70.22-201ENST00000517160 124 ntBASIC0.35□□□□□ -2.35
TNFP01375 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.35□□□□□ -2.35
TNFP01375 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.35□□□□□ -2.35
TNFP01375 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.35□□□□□ -2.35
TNFP01375 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.35□□□□□ -2.35
TNFP01375 AC023824.3-201ENST00000569003 562 ntBASIC0.35□□□□□ -2.35
TNFP01375 MIR3169-201ENST00000578032 83 ntBASIC0.35□□□□□ -2.35
TNFP01375 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.35□□□□□ -2.35
TNFP01375 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.35□□□□□ -2.35
TNFP01375 AC245060.5-201ENST00000610778 3293 ntBASIC0.35□□□□□ -2.35
TNFP01375 MIR10B-201ENST00000385011 110 ntBASIC0.34□□□□□ -2.36
TNFP01375 RPS3AP1-201ENST00000413190 320 ntBASIC0.34□□□□□ -2.36
TNFP01375 AC005534.2-201ENST00000431047 433 ntBASIC0.34□□□□□ -2.36
TNFP01375 MTND2P4-201ENST00000445034 1004 ntBASIC0.34□□□□□ -2.36
TNFP01375 AC013828.1-201ENST00000481845 158 ntBASIC0.34□□□□□ -2.36
TNFP01375 COX6CP6-201ENST00000490840 228 ntBASIC0.34□□□□□ -2.36
TNFP01375 RNU6-885P-201ENST00000516607 104 ntBASIC0.34□□□□□ -2.36
TNFP01375 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC0.34□□□□□ -2.36
TNFP01375 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.34□□□□□ -2.36
TNFP01375 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.34□□□□□ -2.36
TNFP01375 MIR5094-201ENST00000578766 85 ntBASIC0.34□□□□□ -2.36
TNFP01375 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.34□□□□□ -2.36
TNFP01375 AC098614.4-201ENST00000607601 462 ntBASIC0.34□□□□□ -2.36
TNFP01375 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.34□□□□□ -2.36
TNFP01375 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
TNFP01375 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.33□□□□□ -2.36
TNFP01375 RNA5SP361-201ENST00000362686 118 ntBASIC0.33□□□□□ -2.36
TNFP01375 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.33□□□□□ -2.36
TNFP01375 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.33□□□□□ -2.36
TNFP01375 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.33□□□□□ -2.36
TNFP01375 AL669831.1-202ENST00000428504 417 ntBASIC0.33□□□□□ -2.36
TNFP01375 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC0.33□□□□□ -2.36
TNFP01375 SNORD124-201ENST00000459577 104 ntBASIC0.33□□□□□ -2.36
TNFP01375 MTCYBP40-201ENST00000509390 1135 ntBASIC0.33□□□□□ -2.36
TNFP01375 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.33□□□□□ -2.36
TNFP01375 AC087854.1-201ENST00000519706 414 ntBASIC0.33□□□□□ -2.36
TNFP01375 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC0.33□□□□□ -2.36
TNFP01375 NIFKP8-201ENST00000560500 874 ntBASIC0.33□□□□□ -2.36
TNFP01375 HMGB1P33-201ENST00000563485 527 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms