Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 HSPE1P7-201ENST00000604681 321 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA3O43365 AC240442.1-201ENST00000616055 283 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 SDR42E1P4-201ENST00000620894 481 ntBASIC3.28□□□□□ -1.88
HOXA3O43365 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA3O43365 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
HOXA3O43365 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA3O43365 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
HOXA3O43365 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA3O43365 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.89
HOXA3O43365 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
HOXA3O43365 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
HOXA3O43365 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXA3O43365 AL353743.1-202ENST00000431724 1695 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXA3O43365 Y_RNA.60-201ENST00000362831 98 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 Y_RNA.143-201ENST00000363520 106 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 SNORD115-32-201ENST00000364079 82 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXA3O43365 SNORA1.3-201ENST00000384676 136 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 RPS4XP3-201ENST00000398541 413 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 RNU6-1203P-201ENST00000410703 110 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 RNU2-25P-201ENST00000411041 191 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXA3O43365 AL445584.1-201ENST00000431451 330 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 AC016700.2-201ENST00000446011 156 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 AC087477.1-201ENST00000465747 340 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 SNRPGP7-201ENST00000469016 106 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 Y_RNA.673-201ENST00000516306 88 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 IGKV2-23-201ENST00000518729 323 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXA3O43365 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXA3O43365 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXA3O43365 AC136932.1-201ENST00000574771 208 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 AC009163.5-201ENST00000575421 637 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 AC025627.2-201ENST00000576220 160 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 MIR5684-201ENST00000585074 65 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXA3O43365 AC024220.1-201ENST00000603675 484 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 Y_RNA.772-201ENST00000606692 102 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 MIR6868-201ENST00000611215 58 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXA3O43365 AC141273.2-201ENST00000618989 130 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 AC073308.1-201ENST00000623696 305 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 SNORA43.4-201ENST00000629559 138 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXA3O43365 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXA3O43365 AC110491.1-201ENST00000562191 2010 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXA3O43365 ZNF826P-207ENST00000622273 1910 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 ADAM3A-203ENST00000461344 2157 ntBASIC3.27□□□□□ -1.89
HOXA3O43365 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
HOXA3O43365 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXA3O43365 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA3O43365 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA3O43365 RNU6-1301P-201ENST00000362724 104 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 snoU2_19.2-201ENST00000363024 80 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 SNORD35B-201ENST00000363660 87 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 MIR200C-201ENST00000384980 68 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 MIR153-2-201ENST00000385225 87 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
HOXA3O43365 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXA3O43365 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXA3O43365 AC096920.1-201ENST00000423991 241 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 snoU13.28-201ENST00000459235 104 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 MED28P2-201ENST00000475771 317 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 HMGB1P35-201ENST00000503360 598 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXA3O43365 RNU6-1012P-201ENST00000516606 109 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 AC007375.1-201ENST00000554513 578 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 AC023824.2-201ENST00000566185 400 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 AC020914.4-201ENST00000597690 277 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 CR392039.5-201ENST00000623201 510 ntBASIC3.26□□□□□ -1.89
HOXA3O43365 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA3O43365 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
HOXA3O43365 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA3O43365 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA3O43365 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA3O43365 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXA3O43365 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
HOXA3O43365 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA3O43365 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
HOXA3O43365 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA3O43365 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA3O43365 LINC02555-201ENST00000563933 1951 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA3O43365 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.25□□□□□ -1.89
HOXA3O43365 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA3O43365 RNU5B-2P-201ENST00000363036 113 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 Y_RNA.478-201ENST00000384358 107 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 Y_RNA.504-201ENST00000384481 104 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 AL079342.1-201ENST00000401460 267 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 AC139712.2-201ENST00000424302 339 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 AC005300.1-201ENST00000428401 373 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 GOT2P5-201ENST00000433995 546 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 BX679664.1-201ENST00000434429 253 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 SSXP4-201ENST00000451349 245 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms