Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 SNX2P2-201ENST00000424553 323 ntBASIC0.04□□□□□ -2.4
CCDC88BA6NC98 AC104651.1-201ENST00000427559 735 ntBASIC0.04□□□□□ -2.4
CCDC88BA6NC98 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC0.04□□□□□ -2.4
CCDC88BA6NC98 AC098831.1-201ENST00000440661 216 ntBASIC0.04□□□□□ -2.4
CCDC88BA6NC98 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC0.04□□□□□ -2.4
CCDC88BA6NC98 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC0.04□□□□□ -2.4
CCDC88BA6NC98 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.04□□□□□ -2.4
CCDC88BA6NC98 PTP4A1P4-201ENST00000512479 322 ntBASIC0.04□□□□□ -2.4
CCDC88BA6NC98 NACAP3-201ENST00000552100 481 ntBASIC0.04□□□□□ -2.4
CCDC88BA6NC98 CLIC4P2-201ENST00000601934 717 ntBASIC0.04□□□□□ -2.4
CCDC88BA6NC98 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.04□□□□□ -2.4
CCDC88BA6NC98 AC068647.2-201ENST00000637380 353 ntBASIC0.04□□□□□ -2.4
CCDC88BA6NC98 SNORD14D-201ENST00000384390 87 ntBASIC0.03□□□□□ -2.4
CCDC88BA6NC98 MIR514A1-201ENST00000385133 98 ntBASIC0.03□□□□□ -2.4
CCDC88BA6NC98 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
CCDC88BA6NC98 RNU2-43P-201ENST00000410306 190 ntBASIC0.03□□□□□ -2.4
CCDC88BA6NC98 AL512637.2-201ENST00000431287 1256 ntBASIC0.03□□□□□ -2.4
CCDC88BA6NC98 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.03□□□□□ -2.4
CCDC88BA6NC98 OR2AQ1P-201ENST00000451972 200 ntBASIC0.03□□□□□ -2.4
CCDC88BA6NC98 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.03□□□□□ -2.4
CCDC88BA6NC98 RNA5SP168-201ENST00000516642 112 ntBASIC0.03□□□□□ -2.4
CCDC88BA6NC98 Z82243.1-201ENST00000609432 473 ntBASIC0.03□□□□□ -2.4
CCDC88BA6NC98 AL109620.1-201ENST00000618738 1197 ntBASIC0.03□□□□□ -2.4
CCDC88BA6NC98 AC008993.2-201ENST00000631744 806 ntBASIC0.03□□□□□ -2.4
CCDC88BA6NC98 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC0.03□□□□□ -2.41
CCDC88BA6NC98 Y_RNA.124-201ENST00000363339 93 ntBASIC0.03□□□□□ -2.41
CCDC88BA6NC98 Y_RNA.185-201ENST00000363894 100 ntBASIC0.03□□□□□ -2.41
CCDC88BA6NC98 SNORA8.3-201ENST00000384679 139 ntBASIC0.03□□□□□ -2.41
CCDC88BA6NC98 AC112771.1-201ENST00000463581 102 ntBASIC0.03□□□□□ -2.41
CCDC88BA6NC98 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.03□□□□□ -2.41
CCDC88BA6NC98 SCARNA15.2-201ENST00000516409 127 ntBASIC0.03□□□□□ -2.41
CCDC88BA6NC98 SNORD19.2-201ENST00000516978 73 ntBASIC0.03□□□□□ -2.41
CCDC88BA6NC98 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC0.03□□□□□ -2.41
CCDC88BA6NC98 AC091152.3-201ENST00000604227 325 ntBASIC0.03□□□□□ -2.41
CCDC88BA6NC98 AL031176.1-201ENST00000604554 466 ntBASIC0.03□□□□□ -2.41
CCDC88BA6NC98 AC093913.1-201ENST00000614178 329 ntBASIC0.03□□□□□ -2.41
CCDC88BA6NC98 U3.9-201ENST00000363823 204 ntBASIC0.02□□□□□ -2.41
CCDC88BA6NC98 RNU6-1237P-201ENST00000384777 107 ntBASIC0.02□□□□□ -2.41
CCDC88BA6NC98 MIR200A-201ENST00000384875 90 ntBASIC0.02□□□□□ -2.41
CCDC88BA6NC98 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.02□□□□□ -2.41
CCDC88BA6NC98 BEND7P1-201ENST00000422058 457 ntBASIC0.02□□□□□ -2.41
CCDC88BA6NC98 FO393419.3-201ENST00000428741 282 ntBASIC0.02□□□□□ -2.41
CCDC88BA6NC98 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0.02□□□□□ -2.41
CCDC88BA6NC98 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.02□□□□□ -2.41
CCDC88BA6NC98 RNA5SP503-201ENST00000517047 117 ntBASIC0.02□□□□□ -2.41
CCDC88BA6NC98 AP003066.2-201ENST00000529375 555 ntBASIC0.02□□□□□ -2.41
CCDC88BA6NC98 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC88BA6NC98 AC112220.2-201ENST00000605513 533 ntBASIC0.02□□□□□ -2.41
CCDC88BA6NC98 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC88BA6NC98 AC097372.5-201ENST00000623665 376 ntBASIC0.02□□□□□ -2.41
CCDC88BA6NC98 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.01□□□□□ -2.41
CCDC88BA6NC98 RNA5SP98-201ENST00000363158 137 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 MIR649-201ENST00000384843 97 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 RNU6-360P-201ENST00000390944 104 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 MIR942-201ENST00000401111 86 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 USP9YP19-201ENST00000412165 485 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 USP9YP13-201ENST00000417797 480 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 TIMM9P1-201ENST00000436122 256 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 AL353706.1-201ENST00000436728 494 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 RAB11AP1-201ENST00000442978 646 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 MIR4493-201ENST00000584016 73 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.01□□□□□ -2.41
CCDC88BA6NC98 AP003465.2-201ENST00000602571 373 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 AL109659.3-201ENST00000624985 950 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 AC017037.3-201ENST00000625016 472 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 PCMTD1P7-201ENST00000634506 357 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 MIR371B-201ENST00000638082 66 ntBASIC0.01□□□□□ -2.41
CCDC88BA6NC98 RPL37P21-201ENST00000435890 276 ntBASIC0□□□□□ -2.41
CCDC88BA6NC98 RNA5SP269-201ENST00000459032 137 ntBASIC0□□□□□ -2.41
CCDC88BA6NC98 RPL23AP54-201ENST00000495129 419 ntBASIC0□□□□□ -2.41
CCDC88BA6NC98 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0□□□□□ -2.41
CCDC88BA6NC98 CR383656.7-201ENST00000548164 174 ntBASIC0□□□□□ -2.41
CCDC88BA6NC98 Z98751.3-201ENST00000604447 521 ntBASIC0□□□□□ -2.41
CCDC88BA6NC98 AC108676.2-201ENST00000605225 163 ntBASIC0□□□□□ -2.41
CCDC88BA6NC98 AC004775.1-201ENST00000607389 753 ntBASIC0□□□□□ -2.41
CCDC88BA6NC98 AC016542.1-201ENST00000608259 493 ntBASIC0□□□□□ -2.41
CCDC88BA6NC98 5S_rRNA.11-201ENST00000618635 84 ntBASIC0□□□□□ -2.41
CCDC88BA6NC98 AL391994.1-201ENST00000254724 282 ntBASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 AC002429.1-201ENST00000437672 148 ntBASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 AC084024.2-201ENST00000503480 791 ntBASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 AC022493.2-201ENST00000506122 481 ntBASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 RNA5SP291-201ENST00000517222 105 ntBASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 MIR3664-201ENST00000579074 99 ntBASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 AP001180.6-201ENST00000584918 159 ntBASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 AC105129.3-201ENST00000605455 485 ntBASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC-0.01□□□□□ -2.41
CCDC88BA6NC98 RNU2-48P-201ENST00000410694 191 ntBASIC-0.02□□□□□ -2.41
CCDC88BA6NC98 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC-0.02□□□□□ -2.41
CCDC88BA6NC98 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC-0.02□□□□□ -2.41
CCDC88BA6NC98 RPS26P45-201ENST00000471748 340 ntBASIC-0.02□□□□□ -2.41
CCDC88BA6NC98 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC-0.02□□□□□ -2.41
CCDC88BA6NC98 RNU6-1092P-201ENST00000516955 87 ntBASIC-0.02□□□□□ -2.41
CCDC88BA6NC98 AP003392.2-201ENST00000527269 208 ntBASIC-0.02□□□□□ -2.41
CCDC88BA6NC98 RPL21P136-201ENST00000605378 396 ntBASIC-0.02□□□□□ -2.41
CCDC88BA6NC98 AL365434.2-201ENST00000607979 234 ntBASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 142.5 ms