Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.67□□□□□ -1.82
CHFRQ96EP1 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHFRQ96EP1 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHFRQ96EP1 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHFRQ96EP1 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.66□□□□□ -1.82
CHFRQ96EP1 RNU6-1249P-201ENST00000363237 111 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 Y_RNA.269-201ENST00000364685 89 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 RNU6-214P-201ENST00000384130 107 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 RNU6-611P-201ENST00000384276 104 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 MIR215-201ENST00000384858 110 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CHFRQ96EP1 SNORA48.2-201ENST00000390926 124 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 HLFP1-201ENST00000402375 499 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 AL591034.1-201ENST00000407447 340 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 RNU6-174P-201ENST00000410406 106 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 RNU6-293P-201ENST00000411259 106 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 UBE2D3P2-201ENST00000424409 445 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 RPL23AP31-201ENST00000456160 467 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 RNU7-169P-201ENST00000459456 61 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.66□□□□□ -1.82
CHFRQ96EP1 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.66□□□□□ -1.82
CHFRQ96EP1 RNU2-27P-201ENST00000516185 142 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 RNU4-71P-201ENST00000516258 113 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 HMGN1P28-201ENST00000521340 364 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 AP002770.2-201ENST00000543613 532 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.66□□□□□ -1.82
CHFRQ96EP1 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.66□□□□□ -1.82
CHFRQ96EP1 VN1R91P-201ENST00000594377 169 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.66□□□□□ -1.82
CHFRQ96EP1 AC099778.2-201ENST00000610904 211 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHFRQ96EP1 SNORA50A-202ENST00000629536 136 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 AL450472.1-202ENST00000637286 180 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHFRQ96EP1 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHFRQ96EP1 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHFRQ96EP1 HSPA8P4-201ENST00000511877 1920 ntBASIC3.66□□□□□ -1.82
CHFRQ96EP1 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHFRQ96EP1 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.66□□□□□ -1.82
CHFRQ96EP1 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CHFRQ96EP1 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
CHFRQ96EP1 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CHFRQ96EP1 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CHFRQ96EP1 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CHFRQ96EP1 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CHFRQ96EP1 MIR335-201ENST00000362173 94 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 MIR423-201ENST00000362201 94 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 Y_RNA.200-201ENST00000364018 102 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 RNU4-50P-201ENST00000364361 141 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 SNORD50B-201ENST00000364995 70 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 SNORD82-201ENST00000365530 70 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.65□□□□□ -1.83
CHFRQ96EP1 RNU6-378P-201ENST00000384324 107 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 RPS4XP7-201ENST00000406274 780 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 NEFMP1-201ENST00000443423 1006 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 Y_RNA.644-201ENST00000459006 113 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 AC135721.1-201ENST00000497954 479 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 AC107393.1-201ENST00000512403 346 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 Y_RNA.674-201ENST00000516362 113 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 AP006587.4-201ENST00000526053 529 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.65□□□□□ -1.83
CHFRQ96EP1 CBX3P8-201ENST00000532412 525 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 CBX3P4-201ENST00000538909 354 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 ELOCP5-201ENST00000604924 333 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.65□□□□□ -1.83
CHFRQ96EP1 MIR7851-201ENST00000610611 160 ntBASIC3.65□□□□□ -1.83
CHFRQ96EP1 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.65□□□□□ -1.83
CHFRQ96EP1 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.65□□□□□ -1.83
CHFRQ96EP1 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.65□□□□□ -1.83
CHFRQ96EP1 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CHFRQ96EP1 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CHFRQ96EP1 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.65□□□□□ -1.83
CHFRQ96EP1 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CHFRQ96EP1 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.64□□□□□ -1.83
CHFRQ96EP1 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CHFRQ96EP1 RNU1-18P-201ENST00000363062 164 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 Y_RNA.183-201ENST00000363882 113 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 Y_RNA.277-201ENST00000364754 102 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 RNU6-48P-201ENST00000384161 107 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 Y_RNA.471-201ENST00000384312 102 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 RNU6-821P-201ENST00000390995 107 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 RHEBP3-201ENST00000411920 351 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 RPL23AP22-201ENST00000437556 453 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.64□□□□□ -1.83
CHFRQ96EP1 GAPDHP27-201ENST00000447427 1020 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.64□□□□□ -1.83
CHFRQ96EP1 HMGN2P13-201ENST00000476476 274 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 AC093663.1-201ENST00000497190 394 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 GMPSP1-201ENST00000514075 579 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 MIR7112-201ENST00000616126 65 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 AC068831.7-201ENST00000616954 363 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 MIR8057-201ENST00000620957 69 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.64□□□□□ -1.83
CHFRQ96EP1 AC007656.2-201ENST00000624902 4547 ntBASIC3.64□□□□□ -1.83
CHFRQ96EP1 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CHFRQ96EP1 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
CHFRQ96EP1 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms