Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.43□□□□□ -1.7
USP48Q86UV5 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.43□□□□□ -1.7
USP48Q86UV5 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.43□□□□□ -1.7
USP48Q86UV5 SYF2P1-201ENST00000550658 413 ntBASIC4.43□□□□□ -1.7
USP48Q86UV5 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.43□□□□□ -1.7
USP48Q86UV5 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.43□□□□□ -1.7
USP48Q86UV5 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.43□□□□□ -1.7
USP48Q86UV5 AC006077.1-201ENST00000604746 343 ntBASIC4.43□□□□□ -1.7
USP48Q86UV5 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.43□□□□□ -1.7
USP48Q86UV5 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.43□□□□□ -1.7
USP48Q86UV5 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
USP48Q86UV5 U4.7-201ENST00000638126 106 ntBASIC4.43□□□□□ -1.7
USP48Q86UV5 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
USP48Q86UV5 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USP48Q86UV5 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.43□□□□□ -1.7
USP48Q86UV5 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP48Q86UV5 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP48Q86UV5 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP48Q86UV5 Y_RNA.149-201ENST00000363558 117 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 Z98749.2-208ENST00000381646 500 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 MIR521-1-201ENST00000384902 87 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 SNORA48.5-201ENST00000391143 135 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 U3.26-201ENST00000391236 204 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 RPS4XP3-201ENST00000398541 413 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 MIR1302-3-201ENST00000408128 138 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 RHEBP3-201ENST00000411920 351 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.42□□□□□ -1.7
USP48Q86UV5 NDUFS5P4-201ENST00000412983 318 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 HIGD1AP2-201ENST00000446367 280 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 U8.20-201ENST00000459445 131 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 AC128713.1-201ENST00000471495 306 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 UBE2DNL-203ENST00000474922 222 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 AC006445.2-201ENST00000510061 472 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 NDUFB4P9-201ENST00000511646 388 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 RNA5SP208-201ENST00000516156 78 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 AP004607.1-201ENST00000524456 203 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.42□□□□□ -1.7
USP48Q86UV5 AC005476.1-201ENST00000554427 397 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 AC113195.1-201ENST00000579952 141 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 AC008962.1-201ENST00000605729 304 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.42□□□□□ -1.7
USP48Q86UV5 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.42□□□□□ -1.7
USP48Q86UV5 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP48Q86UV5 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP48Q86UV5 CDC27P3-201ENST00000635418 1910 ntBASIC4.42□□□□□ -1.7
USP48Q86UV5 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.42□□□□□ -1.7
USP48Q86UV5 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP48Q86UV5 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
USP48Q86UV5 RNU6-78P-201ENST00000362897 107 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 RNU6-428P-201ENST00000362942 107 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP48Q86UV5 AL591034.2-201ENST00000402839 359 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 Z98941.1-201ENST00000407764 100 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC4.41□□□□□ -1.7
USP48Q86UV5 AC096644.2-201ENST00000429278 159 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.41□□□□□ -1.7
USP48Q86UV5 SNORA71B-202ENST00000439232 272 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 AC099799.1-201ENST00000439809 192 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 HMGN2P7-201ENST00000456186 273 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 HMGN2P13-201ENST00000476476 274 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.41□□□□□ -1.7
USP48Q86UV5 RNU2-27P-201ENST00000516185 142 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 RNU6-928P-201ENST00000516876 104 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USP48Q86UV5 AP005902.1-201ENST00000521358 186 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 AC010186.2-204ENST00000537668 439 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 SUB1P3-201ENST00000564581 315 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC4.41□□□□□ -1.7
USP48Q86UV5 AC012493.2-201ENST00000595083 291 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 AC025946.2-201ENST00000603398 234 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 MIR8076-201ENST00000611401 83 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
USP48Q86UV5 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USP48Q86UV5 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP48Q86UV5 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USP48Q86UV5 AC073073.2-201ENST00000609827 2578 ntBASIC4.41□□□□□ -1.7
USP48Q86UV5 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.41□□□□□ -1.7
USP48Q86UV5 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
USP48Q86UV5 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
USP48Q86UV5 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
USP48Q86UV5 Y_RNA.80-201ENST00000362996 102 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 RNU1-115P-201ENST00000365329 160 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 Y_RNA.485-201ENST00000384395 102 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 RNU6-1222P-201ENST00000384615 107 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 AL138878.1-201ENST00000405131 347 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP48Q86UV5 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.4□□□□□ -1.71
USP48Q86UV5 AC002075.2-201ENST00000425207 252 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.4□□□□□ -1.71
USP48Q86UV5 RPL17P19-201ENST00000489069 552 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 RAC1P2-201ENST00000511164 579 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 SNORA70.18-201ENST00000516696 98 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 RN7SKP209-201ENST00000516888 304 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 HIGD1AP1-201ENST00000550979 275 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 MIR3609-201ENST00000582661 80 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 AC005046.1-201ENST00000608515 625 ntBASIC4.4□□□□□ -1.71
USP48Q86UV5 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC4.4□□□□□ -1.71
USP48Q86UV5 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP48Q86UV5 AF117829.1-206ENST00000621883 3802 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms