Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.57□□□□□ -2
NUP54Q7Z3B4 AC010297.1-201ENST00000623948 149 ntBASIC2.57□□□□□ -2
NUP54Q7Z3B4 AC006386.2-201ENST00000624491 75 ntBASIC2.57□□□□□ -2
NUP54Q7Z3B4 AC012005.1-201ENST00000624575 75 ntBASIC2.57□□□□□ -2
NUP54Q7Z3B4 AP003400.5-201ENST00000624827 617 ntBASIC2.57□□□□□ -2
NUP54Q7Z3B4 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
NUP54Q7Z3B4 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.57□□□□□ -2
NUP54Q7Z3B4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.56□□□□□ -2
NUP54Q7Z3B4 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.56□□□□□ -2
NUP54Q7Z3B4 SNORA80A-201ENST00000363922 136 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 MIR181B1-201ENST00000385240 110 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 CIR1P3-201ENST00000405137 479 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AF274854.1-201ENST00000413236 615 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 EIF4EP4-201ENST00000424916 578 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.56□□□□□ -2
NUP54Q7Z3B4 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.56□□□□□ -2
NUP54Q7Z3B4 GSTA11P-201ENST00000452866 669 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.56□□□□□ -2
NUP54Q7Z3B4 RNU7-167P-201ENST00000459160 62 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 snoU109.2-201ENST00000459316 135 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AP001324.2-201ENST00000461163 319 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AC018437.1-201ENST00000492214 406 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.56□□□□□ -2
NUP54Q7Z3B4 Y_RNA.687-201ENST00000516558 91 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 SNORA31.15-201ENST00000516771 132 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.56□□□□□ -2
NUP54Q7Z3B4 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AC109635.3-201ENST00000529536 185 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 EIF4BP1-201ENST00000554881 351 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.56□□□□□ -2
NUP54Q7Z3B4 U2.17-201ENST00000611454 95 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AC107871.2-201ENST00000612894 502 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 YWHAEP7-203ENST00000622054 312 ntBASIC2.56□□□□□ -2
NUP54Q7Z3B4 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.56□□□□□ -2
NUP54Q7Z3B4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
NUP54Q7Z3B4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.56□□□□□ -2
NUP54Q7Z3B4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NUP54Q7Z3B4 RNU6-942P-201ENST00000363002 107 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 RNU6-1303P-201ENST00000364841 107 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 Y_RNA.324-201ENST00000365165 102 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 Y_RNA.505-201ENST00000384489 102 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 Y_RNA.554-201ENST00000384672 102 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 MIR181A2-201ENST00000384863 110 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 FTH1P15-201ENST00000406984 280 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 RNU6-908P-201ENST00000410160 94 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 RNU2-63P-201ENST00000410792 194 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 USP9YP27-201ENST00000418455 438 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 CALM1P1-201ENST00000442082 433 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.55□□□□□ -2
NUP54Q7Z3B4 AC006026.2-201ENST00000457376 180 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 AC091885.1-201ENST00000506658 268 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 CCDC34P1-201ENST00000507441 517 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 SNORD60.2-201ENST00000516883 86 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.55□□□□□ -2
NUP54Q7Z3B4 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 Z82243.1-201ENST00000609432 473 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 MIR7106-201ENST00000612419 65 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 AC011890.2-201ENST00000613393 294 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 U4atac.1-201ENST00000618345 95 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 AC026585.1-201ENST00000619582 524 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 AC024581.2-201ENST00000619986 252 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 FER-210ENST00000628534 558 ntTSL 5 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 AC068137.3-201ENST00000639191 341 ntBASIC2.55□□□□□ -2
NUP54Q7Z3B4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NUP54Q7Z3B4 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NUP54Q7Z3B4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.55□□□□□ -2
NUP54Q7Z3B4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
NUP54Q7Z3B4 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NUP54Q7Z3B4 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.54□□□□□ -2
NUP54Q7Z3B4 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.54□□□□□ -2
NUP54Q7Z3B4 RNY4P14-201ENST00000363656 96 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 RNU6-82P-201ENST00000363970 107 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 Y_RNA.402-201ENST00000383972 102 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 RNU6-38P-201ENST00000384085 107 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 AL138827.1-201ENST00000402666 306 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.54□□□□□ -2
NUP54Q7Z3B4 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.54□□□□□ -2
NUP54Q7Z3B4 USP9YP18-201ENST00000425912 695 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.54□□□□□ -2
NUP54Q7Z3B4 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 AC004383.1-201ENST00000438135 289 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 AC105272.1-201ENST00000438604 198 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.54□□□□□ -2
NUP54Q7Z3B4 RNU6-333P-201ENST00000459117 107 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 RPL38P4-201ENST00000502376 214 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.54□□□□□ -2
NUP54Q7Z3B4 AC114781.4-201ENST00000513707 639 ntBASIC2.54□□□□□ -2
NUP54Q7Z3B4 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.54□□□□□ -2
NUP54Q7Z3B4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.54□□□□□ -2
NUP54Q7Z3B4 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms