Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 RNU6-496P-201ENST00000516145 99 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 RNU6-927P-201ENST00000516199 100 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 RNU6-405P-201ENST00000516637 110 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 RNU6-467P-201ENST00000517027 110 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 AC090142.3-201ENST00000519012 385 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.28□□□□□ -2.36
HMGN4O00479 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.28□□□□□ -2.36
HMGN4O00479 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.28□□□□□ -2.36
HMGN4O00479 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.28□□□□□ -2.36
HMGN4O00479 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.28□□□□□ -2.36
HMGN4O00479 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.28□□□□□ -2.36
HMGN4O00479 AC012065.4-201ENST00000602445 679 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 AC105129.3-201ENST00000605455 485 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 MIR6134-201ENST00000617606 109 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 AC068787.1-201ENST00000623908 691 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 MIR5087-201ENST00000635826 76 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 U6.101-201ENST00000637707 76 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.28□□□□□ -2.36
HMGN4O00479 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
HMGN4O00479 DBF4P1-201ENST00000412976 1892 ntBASIC0.28□□□□□ -2.36
HMGN4O00479 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
HMGN4O00479 SNORD114-19-201ENST00000363072 75 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.27□□□□□ -2.37
HMGN4O00479 RNU6-160P-201ENST00000384591 107 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 MIR605-201ENST00000385078 83 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 TMSB4XP8-201ENST00000402089 135 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 RNU2-28P-201ENST00000410457 189 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 TMSB4XP6-201ENST00000415187 135 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 BTF3L4P3-201ENST00000418879 476 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 TMSB4XP1-201ENST00000424567 135 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 HSPE1P9-201ENST00000440046 311 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
HMGN4O00479 OR6C5P-201ENST00000452388 923 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 MTND1P16-201ENST00000465177 898 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 SNORA3.4-201ENST00000515969 96 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 RNU2-53P-201ENST00000516257 147 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 RNU6-885P-201ENST00000516607 104 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 RNA5SP135-201ENST00000517019 125 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 RNA5SP503-201ENST00000517047 117 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 SNORA70.22-201ENST00000517160 124 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 AC006518.2-201ENST00000542513 940 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 AC018630.3-201ENST00000542637 96 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.27□□□□□ -2.37
HMGN4O00479 MIR4711-201ENST00000578274 70 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 MIR3664-201ENST00000579074 99 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.27□□□□□ -2.37
HMGN4O00479 AC091057.3-201ENST00000602684 733 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 AC243829.6-201ENST00000612652 106 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 AC090617.9-201ENST00000623751 147 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 AC022513.1-201ENST00000624512 117 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
HMGN4O00479 FARSBP1-201ENST00000435808 1778 ntBASIC0.27□□□□□ -2.37
HMGN4O00479 RNA5SP361-201ENST00000362686 118 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 RNU6-16P-201ENST00000384385 107 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 RNU6-110P-201ENST00000384508 104 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 MTATP6P27-201ENST00000416987 621 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGN4O00479 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.26□□□□□ -2.37
HMGN4O00479 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC0.26□□□□□ -2.37
HMGN4O00479 VN1R10P-201ENST00000447106 875 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 SNORD124-201ENST00000459577 104 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.26□□□□□ -2.37
HMGN4O00479 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.26□□□□□ -2.37
HMGN4O00479 RNU6-1183P-201ENST00000517054 60 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 AC023824.3-201ENST00000569003 562 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 AC022432.1-201ENST00000595739 310 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.26□□□□□ -2.37
HMGN4O00479 AC073410.2-201ENST00000603240 332 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 AC112220.2-201ENST00000605513 533 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 AL365434.2-201ENST00000607979 234 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGN4O00479 AC130454.1-201ENST00000622948 401 ntBASIC0.26□□□□□ -2.37
HMGN4O00479 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
HMGN4O00479 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC0.26□□□□□ -2.37
HMGN4O00479 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.25□□□□□ -2.37
HMGN4O00479 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.25□□□□□ -2.37
HMGN4O00479 AC027514.1-201ENST00000588561 1603 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.25□□□□□ -2.37
HMGN4O00479 RNU6-1167P-201ENST00000363227 94 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 Y_RNA.224-201ENST00000364308 111 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 RNU6-637P-201ENST00000384050 107 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 MIR936-201ENST00000401264 98 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 RNA5SP193-201ENST00000410353 107 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 RPS3AP1-201ENST00000413190 320 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.25□□□□□ -2.37
HMGN4O00479 RPL21P111-201ENST00000418453 477 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 RPL36AP53-201ENST00000432891 316 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.25□□□□□ -2.37
HMGN4O00479 AC130509.1-201ENST00000464158 433 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 AC074344.1-201ENST00000512823 224 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 RNA5SP490-201ENST00000517141 136 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC0.25□□□□□ -2.37
HMGN4O00479 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.25□□□□□ -2.37
HMGN4O00479 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.25□□□□□ -2.37
HMGN4O00479 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.25□□□□□ -2.37
HMGN4O00479 AL139344.1-201ENST00000605228 195 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 AC104465.1-201ENST00000611365 139 ntBASIC0.25□□□□□ -2.37
HMGN4O00479 AL590240.4-201ENST00000616908 390 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms