Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.21■□□□□ 0.02
LSM4Q9Y4Z0 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC15.21■□□□□ 0.02
LSM4Q9Y4Z0 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LSM4Q9Y4Z0 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.21■□□□□ 0.02
LSM4Q9Y4Z0 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LSM4Q9Y4Z0 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 AL512353.2-201ENST00000448759 1962 ntBASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 MDFI-202ENST00000373050 809 ntTSL 2 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 AC012618.2-201ENST00000428058 849 ntBASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 FAM210CP-201ENST00000445714 574 ntBASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LSM4Q9Y4Z0 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 MOK-233ENST00000524214 1539 ntTSL 2 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 RPS20-210ENST00000523936 899 ntTSL 2 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 AC233702.5-201ENST00000584107 538 ntBASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 MTDHP1-201ENST00000605323 784 ntBASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 EFTUD1P1-204ENST00000560401 1798 ntBASIC15.19■□□□□ 0.02
LSM4Q9Y4Z0 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
LSM4Q9Y4Z0 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC15.18■□□□□ 0.02
LSM4Q9Y4Z0 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LSM4Q9Y4Z0 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LSM4Q9Y4Z0 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LSM4Q9Y4Z0 IRX1P1-201ENST00000438849 1838 ntBASIC15.18■□□□□ 0.02
LSM4Q9Y4Z0 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LSM4Q9Y4Z0 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms