Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP42Q9H9J4 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC24.14■■□□□ 1.46
USP42Q9H9J4 UNC93B7-201ENST00000509439 705 ntBASIC24.14■■□□□ 1.46
USP42Q9H9J4 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC24.14■■□□□ 1.46
USP42Q9H9J4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
USP42Q9H9J4 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
USP42Q9H9J4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC24.14■■□□□ 1.46
USP42Q9H9J4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP42Q9H9J4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC24.14■■□□□ 1.46
USP42Q9H9J4 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC24.14■■□□□ 1.46
USP42Q9H9J4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP42Q9H9J4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC24.14■■□□□ 1.45
USP42Q9H9J4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USP42Q9H9J4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP42Q9H9J4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP42Q9H9J4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP42Q9H9J4 AL845331.1-201ENST00000424978 1190 ntBASIC24.13■■□□□ 1.45
USP42Q9H9J4 AP000347.1-202ENST00000435868 847 ntBASIC24.13■■□□□ 1.45
USP42Q9H9J4 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP42Q9H9J4 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP42Q9H9J4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC24.13■■□□□ 1.45
USP42Q9H9J4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP42Q9H9J4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
USP42Q9H9J4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC24.13■■□□□ 1.45
USP42Q9H9J4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC24.13■■□□□ 1.45
USP42Q9H9J4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
USP42Q9H9J4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC24.13■■□□□ 1.45
USP42Q9H9J4 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC24.13■■□□□ 1.45
USP42Q9H9J4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
USP42Q9H9J4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
USP42Q9H9J4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP42Q9H9J4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP42Q9H9J4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP42Q9H9J4 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 KRT17P6-201ENST00000453795 1220 ntBASIC24.12■■□□□ 1.45
USP42Q9H9J4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 AL121672.3-201ENST00000608644 468 ntBASIC24.12■■□□□ 1.45
USP42Q9H9J4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP42Q9H9J4 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP42Q9H9J4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 PCDHAC2-203ENST00000615316 3011 ntBASIC24.12■■□□□ 1.45
USP42Q9H9J4 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC24.12■■□□□ 1.45
USP42Q9H9J4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP42Q9H9J4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP42Q9H9J4 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP42Q9H9J4 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP42Q9H9J4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP42Q9H9J4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP42Q9H9J4 AC004870.1-201ENST00000315132 882 ntBASIC24.11■■□□□ 1.45
USP42Q9H9J4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC24.11■■□□□ 1.45
USP42Q9H9J4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC24.11■■□□□ 1.45
USP42Q9H9J4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC24.11■■□□□ 1.45
USP42Q9H9J4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC24.11■■□□□ 1.45
USP42Q9H9J4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC24.11■■□□□ 1.45
USP42Q9H9J4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC24.11■■□□□ 1.45
USP42Q9H9J4 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC24.11■■□□□ 1.45
USP42Q9H9J4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC24.11■■□□□ 1.45
USP42Q9H9J4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USP42Q9H9J4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.45
USP42Q9H9J4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC24.11■■□□□ 1.45
USP42Q9H9J4 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 BX276092.5-203ENST00000456199 560 ntBASIC24.1■■□□□ 1.45
USP42Q9H9J4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
USP42Q9H9J4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
USP42Q9H9J4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
USP42Q9H9J4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
USP42Q9H9J4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
USP42Q9H9J4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
USP42Q9H9J4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
USP42Q9H9J4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
USP42Q9H9J4 KRT8P10-201ENST00000450021 1447 ntBASIC24.1■■□□□ 1.45
USP42Q9H9J4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC24.1■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 710.9 ms