Protein–RNA interactions for Protein: Q9BSQ5

CCM2, Cerebral cavernous malformations 2 protein, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2Q9BSQ5 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.7■□□□□ 0.58
CCM2Q9BSQ5 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.7■□□□□ 0.58
CCM2Q9BSQ5 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCM2Q9BSQ5 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCM2Q9BSQ5 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCM2Q9BSQ5 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CCM2Q9BSQ5 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCM2Q9BSQ5 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCM2Q9BSQ5 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 AL161938.1-201ENST00000569833 2180 ntBASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCM2Q9BSQ5 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 C2orf69P3-201ENST00000565542 1120 ntBASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCM2Q9BSQ5 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 AC087499.1-201ENST00000418141 1075 ntBASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 NAPSB-206ENST00000562112 1266 ntBASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.67■□□□□ 0.58
CCM2Q9BSQ5 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 CA15P1-201ENST00000481698 905 ntBASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
CCM2Q9BSQ5 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms