Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRCH3Q96II8 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRCH3Q96II8 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRCH3Q96II8 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.55■□□□□ 0.88
LRCH3Q96II8 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRCH3Q96II8 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.55■□□□□ 0.88
LRCH3Q96II8 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.55■□□□□ 0.88
LRCH3Q96II8 AC239800.4-201ENST00000603712 296 ntBASIC20.55■□□□□ 0.88
LRCH3Q96II8 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.55■□□□□ 0.88
LRCH3Q96II8 AC112497.1-201ENST00000624824 639 ntBASIC20.55■□□□□ 0.88
LRCH3Q96II8 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
LRCH3Q96II8 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LRCH3Q96II8 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.55■□□□□ 0.88
LRCH3Q96II8 ZNF259P1-201ENST00000407656 1365 ntBASIC20.55■□□□□ 0.88
LRCH3Q96II8 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.55■□□□□ 0.88
LRCH3Q96II8 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRCH3Q96II8 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRCH3Q96II8 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRCH3Q96II8 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRCH3Q96II8 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRCH3Q96II8 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRCH3Q96II8 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 KRT8P41-201ENST00000533985 1514 ntBASIC20.54■□□□□ 0.88
LRCH3Q96II8 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRCH3Q96II8 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRCH3Q96II8 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRCH3Q96II8 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 MIR662-201ENST00000384847 95 ntBASIC20.54■□□□□ 0.88
LRCH3Q96II8 RPSAP43-201ENST00000402237 625 ntBASIC20.54■□□□□ 0.88
LRCH3Q96II8 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 HLA-F-220ENST00000434407 884 ntBASIC20.54■□□□□ 0.88
LRCH3Q96II8 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 SART3-203ENST00000546611 1184 ntBASIC20.54■□□□□ 0.88
LRCH3Q96II8 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 AL049840.3-201ENST00000602669 611 ntBASIC20.54■□□□□ 0.88
LRCH3Q96II8 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRCH3Q96II8 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRCH3Q96II8 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRCH3Q96II8 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.54■□□□□ 0.88
LRCH3Q96II8 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRCH3Q96II8 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRCH3Q96II8 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRCH3Q96II8 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRCH3Q96II8 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 AC233702.3-201ENST00000578656 1387 ntBASIC20.53■□□□□ 0.88
LRCH3Q96II8 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRCH3Q96II8 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.53■□□□□ 0.88
LRCH3Q96II8 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRCH3Q96II8 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRCH3Q96II8 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
LRCH3Q96II8 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRCH3Q96II8 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRCH3Q96II8 HLA-J-203ENST00000494367 1087 ntBASIC20.52■□□□□ 0.88
LRCH3Q96II8 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.52■□□□□ 0.88
LRCH3Q96II8 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.52■□□□□ 0.88
LRCH3Q96II8 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
LRCH3Q96II8 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC20.52■□□□□ 0.88
LRCH3Q96II8 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.52■□□□□ 0.88
LRCH3Q96II8 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRCH3Q96II8 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LRCH3Q96II8 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
LRCH3Q96II8 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.52■□□□□ 0.87
LRCH3Q96II8 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
LRCH3Q96II8 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LRCH3Q96II8 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.52■□□□□ 0.87
LRCH3Q96II8 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
LRCH3Q96II8 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LRCH3Q96II8 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LRCH3Q96II8 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LRCH3Q96II8 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.51■□□□□ 0.87
LRCH3Q96II8 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
LRCH3Q96II8 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms