Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
SMC1BQ8NDV3 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 AP003733.1-201ENST00000491725 852 ntBASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 FAM197Y3-203ENST00000618346 717 ntBASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 GPAT2P1-201ENST00000444924 1672 ntBASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC22.52■■□□□ 1.2
SMC1BQ8NDV3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 FIS1-203ENST00000442303 631 ntTSL 3 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 AC112482.1-201ENST00000492080 688 ntBASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 AC239800.4-201ENST00000603712 296 ntBASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
SMC1BQ8NDV3 GUSBP5-202ENST00000510805 1989 ntBASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 DNAJB3-201ENST00000446806 729 ntBASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 SCARNA2-201ENST00000458748 420 ntBASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 AL356488.2-201ENST00000602755 427 ntBASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 AC112497.1-201ENST00000624824 639 ntBASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 FAM215A-202ENST00000632077 792 ntBASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 AC134684.3-201ENST00000641758 218 ntBASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC22.5■■□□□ 1.19
SMC1BQ8NDV3 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms