Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 FAM8A6P-201ENST00000407496 1135 ntBASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CCDC60Q8IWA6 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 FEM1AP3-201ENST00000403722 1741 ntBASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC60Q8IWA6 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 MYC-208ENST00000641036 567 ntBASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC60Q8IWA6 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 AC036111.1-201ENST00000533973 1582 ntBASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC60Q8IWA6 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms