Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC25.36■■□□□ 1.65
USP54Q70EL1 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
USP54Q70EL1 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC25.36■■□□□ 1.65
USP54Q70EL1 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC25.36■■□□□ 1.65
USP54Q70EL1 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC25.36■■□□□ 1.65
USP54Q70EL1 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC25.36■■□□□ 1.65
USP54Q70EL1 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC25.36■■□□□ 1.65
USP54Q70EL1 GRAMD4P1-201ENST00000435181 1110 ntBASIC25.36■■□□□ 1.65
USP54Q70EL1 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC25.36■■□□□ 1.65
USP54Q70EL1 NAT14-202ENST00000587400 416 ntTSL 5 BASIC25.36■■□□□ 1.65
USP54Q70EL1 IRF5-214ENST00000613821 595 ntTSL 5 BASIC25.36■■□□□ 1.65
USP54Q70EL1 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
USP54Q70EL1 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC25.35■■□□□ 1.65
USP54Q70EL1 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
USP54Q70EL1 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
USP54Q70EL1 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
USP54Q70EL1 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
USP54Q70EL1 AC246785.2-201ENST00000432512 513 ntBASIC25.35■■□□□ 1.65
USP54Q70EL1 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC25.35■■□□□ 1.65
USP54Q70EL1 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
USP54Q70EL1 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
USP54Q70EL1 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
USP54Q70EL1 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC25.34■■□□□ 1.65
USP54Q70EL1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP54Q70EL1 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP54Q70EL1 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
USP54Q70EL1 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC25.34■■□□□ 1.65
USP54Q70EL1 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP54Q70EL1 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP54Q70EL1 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC25.34■■□□□ 1.65
USP54Q70EL1 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC25.34■■□□□ 1.65
USP54Q70EL1 MIR3652-201ENST00000579335 131 ntBASIC25.34■■□□□ 1.65
USP54Q70EL1 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC25.34■■□□□ 1.65
USP54Q70EL1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC25.34■■□□□ 1.65
USP54Q70EL1 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
USP54Q70EL1 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
USP54Q70EL1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC25.34■■□□□ 1.65
USP54Q70EL1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC25.34■■□□□ 1.65
USP54Q70EL1 AL157384.1-201ENST00000445995 2473 ntBASIC25.34■■□□□ 1.65
USP54Q70EL1 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC25.33■■□□□ 1.65
USP54Q70EL1 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC25.33■■□□□ 1.65
USP54Q70EL1 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 AP002414.4-201ENST00000589764 1148 ntBASIC25.33■■□□□ 1.65
USP54Q70EL1 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC25.33■■□□□ 1.65
USP54Q70EL1 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
USP54Q70EL1 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC25.33■■□□□ 1.65
USP54Q70EL1 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
USP54Q70EL1 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC25.33■■□□□ 1.65
USP54Q70EL1 LINC01521-201ENST00000504184 1943 ntBASIC25.33■■□□□ 1.65
USP54Q70EL1 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP54Q70EL1 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC25.33■■□□□ 1.65
USP54Q70EL1 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
USP54Q70EL1 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
USP54Q70EL1 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC25.32■■□□□ 1.64
USP54Q70EL1 KRT18P23-201ENST00000435622 1283 ntBASIC25.32■■□□□ 1.64
USP54Q70EL1 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC25.32■■□□□ 1.64
USP54Q70EL1 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC25.32■■□□□ 1.64
USP54Q70EL1 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC25.32■■□□□ 1.64
USP54Q70EL1 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
USP54Q70EL1 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 AL691432.3-201ENST00000621860 400 ntBASIC25.32■■□□□ 1.64
USP54Q70EL1 PWWP2AP1-201ENST00000429776 2273 ntBASIC25.32■■□□□ 1.64
USP54Q70EL1 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
USP54Q70EL1 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC25.32■■□□□ 1.64
USP54Q70EL1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 BAALC-202ENST00000306391 243 ntTSL 5 BASIC25.32■■□□□ 1.64
USP54Q70EL1 BAALC-204ENST00000330955 222 ntTSL 5 BASIC25.32■■□□□ 1.64
USP54Q70EL1 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC25.32■■□□□ 1.64
USP54Q70EL1 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC25.32■■□□□ 1.64
USP54Q70EL1 AC092329.2-201ENST00000598402 547 ntBASIC25.32■■□□□ 1.64
USP54Q70EL1 AL390719.2-201ENST00000606993 987 ntBASIC25.32■■□□□ 1.64
USP54Q70EL1 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC25.32■■□□□ 1.64
USP54Q70EL1 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC25.32■■□□□ 1.64
USP54Q70EL1 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
USP54Q70EL1 UBC-206ENST00000538617 1303 ntTSL 5 BASIC25.31■■□□□ 1.64
USP54Q70EL1 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
USP54Q70EL1 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP54Q70EL1 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP54Q70EL1 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP54Q70EL1 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms