Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.31■□□□□ 0.68
USP39Q53GS9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.31■□□□□ 0.68
USP39Q53GS9 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.31■□□□□ 0.68
USP39Q53GS9 AC069148.1-201ENST00000608741 768 ntBASIC19.31■□□□□ 0.68
USP39Q53GS9 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.31■□□□□ 0.68
USP39Q53GS9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP39Q53GS9 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP39Q53GS9 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP39Q53GS9 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.31■□□□□ 0.68
USP39Q53GS9 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
USP39Q53GS9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
USP39Q53GS9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
USP39Q53GS9 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.3■□□□□ 0.68
USP39Q53GS9 VENTXP5-201ENST00000523979 775 ntBASIC19.3■□□□□ 0.68
USP39Q53GS9 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.3■□□□□ 0.68
USP39Q53GS9 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.3■□□□□ 0.68
USP39Q53GS9 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.3■□□□□ 0.68
USP39Q53GS9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
USP39Q53GS9 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.3■□□□□ 0.68
USP39Q53GS9 AC125437.2-201ENST00000625180 2167 ntBASIC19.3■□□□□ 0.68
USP39Q53GS9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.3■□□□□ 0.68
USP39Q53GS9 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP39Q53GS9 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.29■□□□□ 0.68
USP39Q53GS9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.29■□□□□ 0.68
USP39Q53GS9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
USP39Q53GS9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
USP39Q53GS9 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 DUSP5P1-201ENST00000441325 1139 ntBASIC19.29■□□□□ 0.68
USP39Q53GS9 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.29■□□□□ 0.68
USP39Q53GS9 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.29■□□□□ 0.68
USP39Q53GS9 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.29■□□□□ 0.68
USP39Q53GS9 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.29■□□□□ 0.68
USP39Q53GS9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.29■□□□□ 0.68
USP39Q53GS9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
USP39Q53GS9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP39Q53GS9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.28■□□□□ 0.68
USP39Q53GS9 BX119927.1-201ENST00000636596 1552 ntBASIC19.28■□□□□ 0.68
USP39Q53GS9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
USP39Q53GS9 KRT8P45-201ENST00000414328 1447 ntBASIC19.28■□□□□ 0.68
USP39Q53GS9 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.28■□□□□ 0.68
USP39Q53GS9 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.28■□□□□ 0.68
USP39Q53GS9 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.28■□□□□ 0.68
USP39Q53GS9 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.28■□□□□ 0.68
USP39Q53GS9 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.28■□□□□ 0.68
USP39Q53GS9 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.28■□□□□ 0.68
USP39Q53GS9 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 AL136038.3-201ENST00000561909 1096 ntBASIC19.28■□□□□ 0.68
USP39Q53GS9 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.28■□□□□ 0.68
USP39Q53GS9 AL691432.2-201ENST00000607222 2038 ntBASIC19.28■□□□□ 0.68
USP39Q53GS9 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP39Q53GS9 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
USP39Q53GS9 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
USP39Q53GS9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.27■□□□□ 0.68
USP39Q53GS9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
USP39Q53GS9 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.27■□□□□ 0.68
USP39Q53GS9 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms