Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 UNC93B4-201ENST00000505679 747 ntBASIC18.64■□□□□ 0.57
PKNOX1P55347 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.64■□□□□ 0.57
PKNOX1P55347 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.64■□□□□ 0.57
PKNOX1P55347 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.64■□□□□ 0.57
PKNOX1P55347 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
PKNOX1P55347 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
PKNOX1P55347 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PKNOX1P55347 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.64■□□□□ 0.57
PKNOX1P55347 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PKNOX1P55347 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PKNOX1P55347 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.64■□□□□ 0.57
PKNOX1P55347 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PKNOX1P55347 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
PKNOX1P55347 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
PKNOX1P55347 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 WIZP1-201ENST00000531444 2299 ntBASIC18.63■□□□□ 0.57
PKNOX1P55347 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PKNOX1P55347 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PKNOX1P55347 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.63■□□□□ 0.57
PKNOX1P55347 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PKNOX1P55347 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PKNOX1P55347 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 PCDHB18P-201ENST00000524813 2368 ntBASIC18.63■□□□□ 0.57
PKNOX1P55347 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 AC093525.10-201ENST00000625130 1569 ntBASIC18.63■□□□□ 0.57
PKNOX1P55347 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
PKNOX1P55347 FEM1AP3-201ENST00000403722 1741 ntBASIC18.63■□□□□ 0.57
PKNOX1P55347 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.63■□□□□ 0.57
PKNOX1P55347 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PKNOX1P55347 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
PKNOX1P55347 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.62■□□□□ 0.57
PKNOX1P55347 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.62■□□□□ 0.57
PKNOX1P55347 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.62■□□□□ 0.57
PKNOX1P55347 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.62■□□□□ 0.57
PKNOX1P55347 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.62■□□□□ 0.57
PKNOX1P55347 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
PKNOX1P55347 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.62■□□□□ 0.57
PKNOX1P55347 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.62■□□□□ 0.57
PKNOX1P55347 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.62■□□□□ 0.57
PKNOX1P55347 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.62■□□□□ 0.57
PKNOX1P55347 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PKNOX1P55347 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
PKNOX1P55347 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 AC090164.3-201ENST00000610780 2143 ntBASIC18.61■□□□□ 0.57
PKNOX1P55347 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
PKNOX1P55347 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.61■□□□□ 0.57
PKNOX1P55347 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
PKNOX1P55347 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.61■□□□□ 0.57
PKNOX1P55347 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.61■□□□□ 0.57
PKNOX1P55347 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.61■□□□□ 0.57
PKNOX1P55347 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.61■□□□□ 0.57
PKNOX1P55347 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.61■□□□□ 0.57
PKNOX1P55347 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PKNOX1P55347 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms