Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CUX1P39880 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CUX1P39880 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC31.85■■■□□ 2.69
CUX1P39880 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC31.85■■■□□ 2.69
CUX1P39880 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC31.85■■■□□ 2.69
CUX1P39880 CALM1-205ENST00000553542 877 ntTSL 5 BASIC31.85■■■□□ 2.69
CUX1P39880 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
CUX1P39880 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC31.85■■■□□ 2.69
CUX1P39880 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CUX1P39880 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
CUX1P39880 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CUX1P39880 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
CUX1P39880 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
CUX1P39880 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
CUX1P39880 AC233702.3-201ENST00000578656 1387 ntBASIC31.85■■■□□ 2.69
CUX1P39880 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CUX1P39880 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
CUX1P39880 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC31.85■■■□□ 2.69
CUX1P39880 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
CUX1P39880 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC31.85■■■□□ 2.69
CUX1P39880 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC31.85■■■□□ 2.69
CUX1P39880 BET1L-206ENST00000486280 665 ntTSL 3 BASIC31.85■■■□□ 2.69
CUX1P39880 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC31.85■■■□□ 2.69
CUX1P39880 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC31.85■■■□□ 2.69
CUX1P39880 AL121772.3-201ENST00000610840 674 ntBASIC31.85■■■□□ 2.69
CUX1P39880 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CUX1P39880 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC31.84■■■□□ 2.69
CUX1P39880 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
CUX1P39880 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC31.84■■■□□ 2.69
CUX1P39880 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC31.84■■■□□ 2.69
CUX1P39880 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
CUX1P39880 AC104390.1-201ENST00000555663 520 ntBASIC31.84■■■□□ 2.69
CUX1P39880 AC074051.2-201ENST00000565115 352 ntBASIC31.84■■■□□ 2.69
CUX1P39880 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC31.84■■■□□ 2.69
CUX1P39880 TP73-AS1-207ENST00000624167 988 ntBASIC31.84■■■□□ 2.69
CUX1P39880 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
CUX1P39880 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
CUX1P39880 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CUX1P39880 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CUX1P39880 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
CUX1P39880 RNA5SP419-201ENST00000515908 135 ntBASIC31.83■■■□□ 2.69
CUX1P39880 ABR-204ENST00000543210 1049 ntTSL 2 BASIC31.83■■■□□ 2.69
CUX1P39880 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
CUX1P39880 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC31.83■■■□□ 2.69
CUX1P39880 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
CUX1P39880 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
CUX1P39880 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.69
CUX1P39880 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.69
CUX1P39880 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.68
CUX1P39880 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC31.82■■■□□ 2.68
CUX1P39880 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
CUX1P39880 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CUX1P39880 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CUX1P39880 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
CUX1P39880 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC31.82■■■□□ 2.68
CUX1P39880 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC31.82■■■□□ 2.68
CUX1P39880 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC31.82■■■□□ 2.68
CUX1P39880 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC31.82■■■□□ 2.68
CUX1P39880 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
CUX1P39880 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC31.82■■■□□ 2.68
CUX1P39880 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC31.82■■■□□ 2.68
CUX1P39880 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CUX1P39880 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC31.82■■■□□ 2.68
CUX1P39880 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
CUX1P39880 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CUX1P39880 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CUX1P39880 AL109659.2-201ENST00000606809 1674 ntBASIC31.81■■■□□ 2.68
CUX1P39880 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CUX1P39880 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CUX1P39880 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC31.81■■■□□ 2.68
CUX1P39880 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
CUX1P39880 AC091304.2-201ENST00000564639 760 ntBASIC31.81■■■□□ 2.68
CUX1P39880 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CUX1P39880 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC31.81■■■□□ 2.68
CUX1P39880 VPS51-217ENST00000639871 243 ntTSL 5 BASIC31.81■■■□□ 2.68
CUX1P39880 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC31.81■■■□□ 2.68
CUX1P39880 HLA-A-201ENST00000376802 1334 ntBASIC31.81■■■□□ 2.68
CUX1P39880 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CUX1P39880 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
CUX1P39880 RCC2P3-201ENST00000418112 1537 ntBASIC31.8■■■□□ 2.68
CUX1P39880 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC31.8■■■□□ 2.68
CUX1P39880 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CUX1P39880 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CUX1P39880 ELP6-205ENST00000439305 880 ntTSL 2 BASIC31.8■■■□□ 2.68
CUX1P39880 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC31.8■■■□□ 2.68
CUX1P39880 AC104819.1-201ENST00000504587 486 ntBASIC31.8■■■□□ 2.68
CUX1P39880 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC31.8■■■□□ 2.68
CUX1P39880 AP005901.3-202ENST00000581653 237 ntBASIC31.8■■■□□ 2.68
CUX1P39880 AL121912.1-201ENST00000603683 238 ntBASIC31.8■■■□□ 2.68
CUX1P39880 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CUX1P39880 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CUX1P39880 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CUX1P39880 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CUX1P39880 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CUX1P39880 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC31.8■■■□□ 2.68
CUX1P39880 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CUX1P39880 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC31.8■■■□□ 2.68
CUX1P39880 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CUX1P39880 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CUX1P39880 ENSA-205ENST00000361532 792 ntTSL 2 BASIC31.8■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms