Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.41■■□□□ 1.02
CIITAP33076 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.4■■□□□ 1.02
CIITAP33076 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.4■■□□□ 1.02
CIITAP33076 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 AL512353.2-201ENST00000448759 1962 ntBASIC21.4■■□□□ 1.02
CIITAP33076 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.4■■□□□ 1.02
CIITAP33076 AL023284.2-201ENST00000405850 579 ntBASIC21.4■■□□□ 1.02
CIITAP33076 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 AL137013.1-201ENST00000432946 1228 ntBASIC21.4■■□□□ 1.02
CIITAP33076 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 AC092865.7-201ENST00000641832 219 ntBASIC21.4■■□□□ 1.02
CIITAP33076 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CIITAP33076 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
CIITAP33076 GPAT2P1-201ENST00000444924 1672 ntBASIC21.4■■□□□ 1.02
CIITAP33076 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.4■■□□□ 1.02
CIITAP33076 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CIITAP33076 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.4■■□□□ 1.02
CIITAP33076 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CIITAP33076 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.02
CIITAP33076 KRT8P32-201ENST00000512863 1461 ntBASIC21.39■■□□□ 1.02
CIITAP33076 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CIITAP33076 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
CIITAP33076 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.39■■□□□ 1.02
CIITAP33076 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CIITAP33076 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.39■■□□□ 1.01
CIITAP33076 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CIITAP33076 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CIITAP33076 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CIITAP33076 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.39■■□□□ 1.01
CIITAP33076 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.39■■□□□ 1.01
CIITAP33076 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CIITAP33076 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CIITAP33076 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CIITAP33076 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CIITAP33076 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CIITAP33076 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.39■■□□□ 1.01
CIITAP33076 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CIITAP33076 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.39■■□□□ 1.01
CIITAP33076 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CIITAP33076 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CIITAP33076 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
CIITAP33076 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.38■■□□□ 1.01
CIITAP33076 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.38■■□□□ 1.01
CIITAP33076 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.38■■□□□ 1.01
CIITAP33076 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.38■■□□□ 1.01
CIITAP33076 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
CIITAP33076 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
CIITAP33076 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CIITAP33076 KRT8P45-201ENST00000414328 1447 ntBASIC21.38■■□□□ 1.01
CIITAP33076 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CIITAP33076 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
CIITAP33076 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CIITAP33076 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CIITAP33076 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CIITAP33076 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
CIITAP33076 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.37■■□□□ 1.01
CIITAP33076 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CIITAP33076 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.37■■□□□ 1.01
CIITAP33076 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.37■■□□□ 1.01
CIITAP33076 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.37■■□□□ 1.01
CIITAP33076 AL512604.3-201ENST00000569583 964 ntBASIC21.37■■□□□ 1.01
CIITAP33076 WWOX-216ENST00000569818 525 ntBASIC21.37■■□□□ 1.01
CIITAP33076 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.37■■□□□ 1.01
CIITAP33076 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.37■■□□□ 1.01
CIITAP33076 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.37■■□□□ 1.01
CIITAP33076 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.37■■□□□ 1.01
CIITAP33076 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
CIITAP33076 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.37■■□□□ 1.01
CIITAP33076 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.36■■□□□ 1.01
CIITAP33076 AL049812.1-201ENST00000432563 2267 ntBASIC21.36■■□□□ 1.01
CIITAP33076 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
CIITAP33076 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms