Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.67■□□□□ 0.74
VCANP13611 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCANP13611 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 MIR770-201ENST00000390219 98 ntBASIC19.66■□□□□ 0.74
VCANP13611 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
VCANP13611 KRT18P3-201ENST00000451602 1288 ntBASIC19.66■□□□□ 0.74
VCANP13611 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.66■□□□□ 0.74
VCANP13611 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 AC138761.1-201ENST00000584393 385 ntBASIC19.66■□□□□ 0.74
VCANP13611 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VCANP13611 KRT18P28-201ENST00000453838 1332 ntBASIC19.66■□□□□ 0.74
VCANP13611 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.66■□□□□ 0.74
VCANP13611 AC091607.1-201ENST00000490318 1060 ntBASIC19.66■□□□□ 0.74
VCANP13611 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.66■□□□□ 0.74
VCANP13611 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.66■□□□□ 0.74
VCANP13611 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.66■□□□□ 0.74
VCANP13611 AF106564.1-201ENST00000607058 2553 ntBASIC19.66■□□□□ 0.74
VCANP13611 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.66■□□□□ 0.74
VCANP13611 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCANP13611 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.66■□□□□ 0.74
VCANP13611 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.66■□□□□ 0.74
VCANP13611 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VCANP13611 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VCANP13611 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.65■□□□□ 0.74
VCANP13611 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.65■□□□□ 0.74
VCANP13611 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.65■□□□□ 0.74
VCANP13611 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
VCANP13611 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.65■□□□□ 0.74
VCANP13611 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.65■□□□□ 0.74
VCANP13611 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VCANP13611 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.65■□□□□ 0.74
VCANP13611 AL035252.4-201ENST00000624174 288 ntBASIC19.65■□□□□ 0.74
VCANP13611 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCANP13611 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
VCANP13611 AL391807.1-203ENST00000604392 2365 ntBASIC19.65■□□□□ 0.74
VCANP13611 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.65■□□□□ 0.74
VCANP13611 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.64■□□□□ 0.74
VCANP13611 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.64■□□□□ 0.74
VCANP13611 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.64■□□□□ 0.74
VCANP13611 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.64■□□□□ 0.74
VCANP13611 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
VCANP13611 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
VCANP13611 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VCANP13611 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VCANP13611 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCANP13611 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCANP13611 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCANP13611 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VCANP13611 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.64■□□□□ 0.73
VCANP13611 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.64■□□□□ 0.73
VCANP13611 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.64■□□□□ 0.73
VCANP13611 AC004832.2-201ENST00000426397 482 ntBASIC19.64■□□□□ 0.73
VCANP13611 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.64■□□□□ 0.73
VCANP13611 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCANP13611 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.64■□□□□ 0.73
VCANP13611 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.64■□□□□ 0.73
VCANP13611 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VCANP13611 TMEM179-206ENST00000616017 1645 ntBASIC19.64■□□□□ 0.73
VCANP13611 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
VCANP13611 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.64■□□□□ 0.73
VCANP13611 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.64■□□□□ 0.73
VCANP13611 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCANP13611 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCANP13611 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.63■□□□□ 0.73
VCANP13611 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
VCANP13611 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VCANP13611 AL136038.4-201ENST00000603606 1261 ntBASIC19.63■□□□□ 0.73
VCANP13611 AL096865.1-201ENST00000606796 927 ntBASIC19.63■□□□□ 0.73
VCANP13611 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.63■□□□□ 0.73
VCANP13611 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.63■□□□□ 0.73
VCANP13611 GPAT2P1-201ENST00000444924 1672 ntBASIC19.63■□□□□ 0.73
VCANP13611 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VCANP13611 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCANP13611 AC005034.1-201ENST00000426657 489 ntBASIC19.63■□□□□ 0.73
VCANP13611 CNN2P11-201ENST00000429351 262 ntBASIC19.63■□□□□ 0.73
VCANP13611 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.63■□□□□ 0.73
VCANP13611 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.63■□□□□ 0.73
VCANP13611 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.63■□□□□ 0.73
VCANP13611 FBXW4P1-201ENST00000426721 2239 ntBASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms