Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
MSH4O15457 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
MSH4O15457 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
MSH4O15457 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 AL137013.1-201ENST00000432946 1228 ntBASIC21.35■■□□□ 1.01
MSH4O15457 FAM210CP-201ENST00000445714 574 ntBASIC21.35■■□□□ 1.01
MSH4O15457 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH4O15457 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
MSH4O15457 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 GPAT2P1-201ENST00000444924 1672 ntBASIC21.34■■□□□ 1.01
MSH4O15457 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.34■■□□□ 1.01
MSH4O15457 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.34■■□□□ 1.01
MSH4O15457 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.34■■□□□ 1.01
MSH4O15457 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.34■■□□□ 1.01
MSH4O15457 KRT18P57-201ENST00000443599 1254 ntBASIC21.34■■□□□ 1.01
MSH4O15457 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.34■■□□□ 1.01
MSH4O15457 RN7SL850P-201ENST00000579959 291 ntBASIC21.34■■□□□ 1.01
MSH4O15457 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
MSH4O15457 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
MSH4O15457 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH4O15457 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
MSH4O15457 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
MSH4O15457 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MSH4O15457 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH4O15457 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH4O15457 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MSH4O15457 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH4O15457 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.33■■□□□ 1.01
MSH4O15457 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH4O15457 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.33■■□□□ 1.01
MSH4O15457 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.33■■□□□ 1.01
MSH4O15457 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH4O15457 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH4O15457 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH4O15457 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.33■■□□□ 1
MSH4O15457 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.33■■□□□ 1
MSH4O15457 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
MSH4O15457 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.33■■□□□ 1
MSH4O15457 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.33■■□□□ 1
MSH4O15457 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH4O15457 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.32■■□□□ 1
MSH4O15457 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.32■■□□□ 1
MSH4O15457 KRT8P45-201ENST00000414328 1447 ntBASIC21.32■■□□□ 1
MSH4O15457 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH4O15457 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.32■■□□□ 1
MSH4O15457 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
MSH4O15457 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH4O15457 AL023284.2-201ENST00000405850 579 ntBASIC21.32■■□□□ 1
MSH4O15457 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.32■■□□□ 1
MSH4O15457 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.32■■□□□ 1
MSH4O15457 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.32■■□□□ 1
MSH4O15457 AL138966.2-201ENST00000621997 464 ntBASIC21.32■■□□□ 1
MSH4O15457 AC092865.7-201ENST00000641832 219 ntBASIC21.32■■□□□ 1
MSH4O15457 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.32■■□□□ 1
MSH4O15457 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
MSH4O15457 AL512353.2-201ENST00000448759 1962 ntBASIC21.32■■□□□ 1
MSH4O15457 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH4O15457 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
MSH4O15457 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.31■■□□□ 1
MSH4O15457 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.31■■□□□ 1
MSH4O15457 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH4O15457 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.31■■□□□ 1
MSH4O15457 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.31■■□□□ 1
MSH4O15457 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
MSH4O15457 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH4O15457 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.31■■□□□ 1
MSH4O15457 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.31■■□□□ 1
MSH4O15457 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH4O15457 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH4O15457 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH4O15457 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH4O15457 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.31■■□□□ 1
MSH4O15457 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
MSH4O15457 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH4O15457 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
MSH4O15457 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
MSH4O15457 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.31■■□□□ 1
MSH4O15457 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
MSH4O15457 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms