Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 RNA5SP361-201ENST00000362686 118 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-1159P-201ENST00000362933 107 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 Y_RNA.286-201ENST00000364813 102 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 RNA5SP366-201ENST00000365454 123 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 Y_RNA.435-201ENST00000384095 112 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-1145P-201ENST00000384246 107 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 SNORD116-20-201ENST00000384529 92 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 RPS26P42-201ENST00000413485 326 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AC007969.2-201ENST00000441891 191 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 Y_RNA.638-201ENST00000459374 113 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 Vault.1-201ENST00000516474 102 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-567P-201ENST00000516746 107 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 RNA5SP54-201ENST00000516951 92 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 MIR3138-201ENST00000585238 82 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AL713866.2-201ENST00000603579 219 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AC012468.1-201ENST00000604888 430 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AC011921.3-201ENST00000605540 361 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 MIR6748-201ENST00000610433 71 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AC008785.1-201ENST00000624475 456 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 SNORA43.4-201ENST00000629559 138 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 HAUS6P2-201ENST00000433254 2404 ntBASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
UBE3DQ7Z6J8 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 AC092268.1-201ENST00000342691 405 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 Y_RNA.240-201ENST00000364469 95 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 Y_RNA.291-201ENST00000364886 113 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 RNU1-100P-201ENST00000365255 165 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 MIR329-1-201ENST00000385028 80 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 MIR613-201ENST00000385248 95 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 FAR2P2-201ENST00000413041 594 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 RPL23AP36-201ENST00000413895 458 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 AC074117.2-201ENST00000417130 397 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 AC078809.1-201ENST00000427601 140 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 HMGB3P8-201ENST00000449709 577 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 SNORD2.1-201ENST00000458762 69 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 AC091167.1-201ENST00000492017 396 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 BTF3L4P4-201ENST00000506381 449 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 SNORA40.9-201ENST00000515895 93 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 SNORD116-28-201ENST00000516123 91 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-1278P-201ENST00000516130 107 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 SNORA27.4-201ENST00000516650 95 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-58P-201ENST00000517143 103 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 RAB9BP1-201ENST00000519581 626 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 AP005660.1-201ENST00000522972 293 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 AC021231.3-201ENST00000558497 370 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 CYP4A43P-201ENST00000568156 121 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 FAM35BP-202ENST00000497389 3337 ntBASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
UBE3DQ7Z6J8 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 AC015813.6-201ENST00000624409 5808 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 RNA5SP240-201ENST00000365355 128 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 MIR325-201ENST00000385260 98 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 RNU4-30P-201ENST00000410245 143 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 RPL23AP26-201ENST00000412728 464 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 AC125238.1-201ENST00000448842 249 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 AC109327.1-201ENST00000471666 403 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 RPS29P19-201ENST00000479709 171 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 AC091959.1-201ENST00000495857 238 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 AC091874.1-201ENST00000511402 339 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 AC108043.1-201ENST00000512696 574 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 CKS1BP7-201ENST00000522230 235 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 NACAP3-201ENST00000552100 481 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 HSPE1P5-201ENST00000561489 272 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 MIR5695-201ENST00000579717 85 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 AL590240.4-201ENST00000616908 390 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 269.2 ms