Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 Y_RNA.473-201ENST00000384333 102 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 RNU6-692P-201ENST00000384496 107 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 EI24P2-201ENST00000397776 1076 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.08□□□□□ -1.76
SF3A1Q15459 Z99755.1-201ENST00000414048 380 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 SYF2P2-201ENST00000417620 583 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SF3A1Q15459 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC4.08□□□□□ -1.76
SF3A1Q15459 AC026784.1-201ENST00000507986 352 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 MIR4425-201ENST00000580572 84 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 AL359314.1-201ENST00000616913 261 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 AP003355.3-201ENST00000623465 114 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.07□□□□□ -1.76
SF3A1Q15459 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
SF3A1Q15459 AC007823.1-201ENST00000569932 1566 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 AL079305.1-201ENST00000623159 3008 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 MIR544A-201ENST00000384855 91 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 MIR184-201ENST00000384962 84 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 MIR449B-201ENST00000384995 97 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
SF3A1Q15459 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
SF3A1Q15459 RNU6-1140P-201ENST00000410517 106 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.07□□□□□ -1.76
SF3A1Q15459 USP9YP30-201ENST00000430729 455 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.07□□□□□ -1.76
SF3A1Q15459 AC236972.2-201ENST00000434979 310 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 AC243964.1-201ENST00000441814 261 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.07□□□□□ -1.76
SF3A1Q15459 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.07□□□□□ -1.76
SF3A1Q15459 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.07□□□□□ -1.76
SF3A1Q15459 RPL31P41-201ENST00000477967 372 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 PTP4A1P4-201ENST00000512479 322 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.07□□□□□ -1.76
SF3A1Q15459 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 Y_RNA.708-201ENST00000516950 96 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC4.07□□□□□ -1.76
SF3A1Q15459 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC4.07□□□□□ -1.76
SF3A1Q15459 AC018462.2-201ENST00000605375 395 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.07□□□□□ -1.76
SF3A1Q15459 MTND4LP32-201ENST00000636111 270 ntBASIC4.07□□□□□ -1.76
SF3A1Q15459 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
SF3A1Q15459 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SF3A1Q15459 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
SF3A1Q15459 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SF3A1Q15459 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.06□□□□□ -1.76
SF3A1Q15459 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
SF3A1Q15459 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SF3A1Q15459 TTN-204ENST00000360870 18218 ntTSL 5 BASIC4.06□□□□□ -1.76
SF3A1Q15459 AC099654.7-201ENST00000635788 2127 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
SF3A1Q15459 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.06□□□□□ -1.76
SF3A1Q15459 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SF3A1Q15459 MIR208A-201ENST00000362287 71 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 RNU4-79P-201ENST00000362764 141 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 RNU6-1059P-201ENST00000363752 98 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 Y_RNA.333-201ENST00000365274 102 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 RNU6-487P-201ENST00000365430 104 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC4.06□□□□□ -1.76
SF3A1Q15459 BTF3L4P2-201ENST00000392798 346 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AC017079.2-201ENST00000416102 485 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 DBIP2-201ENST00000419076 262 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.06□□□□□ -1.76
SF3A1Q15459 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.06□□□□□ -1.76
SF3A1Q15459 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.06□□□□□ -1.76
SF3A1Q15459 AC091286.1-201ENST00000431233 461 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AL133396.1-201ENST00000432048 687 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AC008571.1-201ENST00000467232 300 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 RPL30P12-201ENST00000474666 353 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.06□□□□□ -1.76
SF3A1Q15459 SCARNA17.1-201ENST00000516211 143 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 SCARNA17.2-201ENST00000516334 143 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 SNORA70.18-201ENST00000516696 98 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AC026333.2-201ENST00000542164 106 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.06□□□□□ -1.76
SF3A1Q15459 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.06□□□□□ -1.76
SF3A1Q15459 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.06□□□□□ -1.76
SF3A1Q15459 AC109446.1-201ENST00000566172 220 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AC105137.2-201ENST00000569073 466 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AC090897.2-201ENST00000581715 130 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.06□□□□□ -1.76
SF3A1Q15459 RPS15AP11-201ENST00000594193 385 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AC009229.3-201ENST00000608056 282 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AC096772.1-201ENST00000609146 564 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 SCARNA17.4-201ENST00000614296 143 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 AC022149.2-201ENST00000621061 203 ntBASIC4.06□□□□□ -1.76
SF3A1Q15459 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SF3A1Q15459 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SF3A1Q15459 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SF3A1Q15459 RNU6-227P-201ENST00000362865 103 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 Y_RNA.509-201ENST00000384506 99 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 SNORA48.8-201ENST00000391324 134 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 Y_RNA.594-201ENST00000410373 140 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 RNU6-954P-201ENST00000411355 107 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 YME1L1P1-201ENST00000429435 297 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 AC007969.2-201ENST00000441891 191 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.05□□□□□ -1.76
SF3A1Q15459 AP001025.1-201ENST00000486139 332 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 RNU5B-3P-201ENST00000516601 115 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms