Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNA5SP374-201ENST00000362939 125 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SMARCA1P28370 SNORD73A-201ENST00000386062 65 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 RNU6-1304P-201ENST00000411374 106 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 AL139396.1-201ENST00000421137 167 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.6□□□□□ -1.83
SMARCA1P28370 AC007560.1-201ENST00000426912 237 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SMARCA1P28370 AL627311.1-201ENST00000431514 115 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.6□□□□□ -1.83
SMARCA1P28370 AL031183.1-201ENST00000457667 207 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 AC092798.1-201ENST00000458542 409 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 snoU13.28-201ENST00000459235 104 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 RN7SL442P-201ENST00000473804 320 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.6□□□□□ -1.83
SMARCA1P28370 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SMARCA1P28370 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.6□□□□□ -1.83
SMARCA1P28370 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.6□□□□□ -1.83
SMARCA1P28370 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.6□□□□□ -1.83
SMARCA1P28370 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.6□□□□□ -1.83
SMARCA1P28370 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.6□□□□□ -1.83
SMARCA1P28370 AL160281.1-201ENST00000605307 311 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 AL133255.1-201ENST00000606374 441 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 AC091953.5-201ENST00000622919 233 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 AC073308.1-201ENST00000623696 305 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SMARCA1P28370 AC099654.10-201ENST00000640395 161 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SMARCA1P28370 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.6□□□□□ -1.83
SMARCA1P28370 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
SMARCA1P28370 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.59□□□□□ -1.83
SMARCA1P28370 RNU6-778P-201ENST00000363269 103 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 RNU6-884P-201ENST00000363889 107 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 Y_RNA.259-201ENST00000364619 101 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 RNU6-1329P-201ENST00000365664 107 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 SNORD116-29-201ENST00000384516 83 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 MIR10A-201ENST00000385043 110 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 RNA5SP293-201ENST00000410527 113 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 RPL32P35-201ENST00000415214 394 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.59□□□□□ -1.83
SMARCA1P28370 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.59□□□□□ -1.83
SMARCA1P28370 AC099548.1-201ENST00000421443 426 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 AC098614.2-201ENST00000426040 255 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 SNAP23P1-201ENST00000433229 246 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 RPL23AP22-201ENST00000437556 453 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.59□□□□□ -1.83
SMARCA1P28370 AC130509.1-201ENST00000464158 433 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.59□□□□□ -1.83
SMARCA1P28370 RPL39P5-202ENST00000512505 151 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.59□□□□□ -1.83
SMARCA1P28370 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.59□□□□□ -1.83
SMARCA1P28370 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.59□□□□□ -1.83
SMARCA1P28370 APOOP3-201ENST00000536787 586 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 H3F3AP1-201ENST00000559984 334 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.59□□□□□ -1.83
SMARCA1P28370 ELOCP5-201ENST00000604924 333 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.59□□□□□ -1.83
SMARCA1P28370 AC064836.2-201ENST00000609491 462 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 AL160413.1-201ENST00000622780 310 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 AC138627.2-201ENST00000624202 601 ntBASIC3.59□□□□□ -1.83
SMARCA1P28370 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.59□□□□□ -1.83
SMARCA1P28370 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
SMARCA1P28370 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.58□□□□□ -1.84
SMARCA1P28370 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SMARCA1P28370 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.58□□□□□ -1.84
SMARCA1P28370 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SMARCA1P28370 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.58□□□□□ -1.84
SMARCA1P28370 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SMARCA1P28370 SNORD56.3-201ENST00000363507 71 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 RNU6-805P-201ENST00000365643 106 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 RNU6-214P-201ENST00000384130 107 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 RNU6-198P-201ENST00000384258 104 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 RNU6-1297P-201ENST00000384415 104 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 RNU6-1011P-201ENST00000384668 107 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 AF228730.4-201ENST00000421457 183 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.58□□□□□ -1.84
SMARCA1P28370 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.58□□□□□ -1.84
SMARCA1P28370 AL078601.1-201ENST00000444542 271 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 AC007677.1-201ENST00000445757 515 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.58□□□□□ -1.84
SMARCA1P28370 RPL27AP5-201ENST00000469428 449 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 AC096745.1-201ENST00000509945 370 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 RNU1-103P-201ENST00000516502 125 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 Y_RNA.718-201ENST00000517110 102 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.58□□□□□ -1.84
SMARCA1P28370 AC104576.1-201ENST00000524225 88 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 IMMP1LP2-201ENST00000552954 492 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 CYCSP39-201ENST00000565821 309 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.58□□□□□ -1.84
SMARCA1P28370 OR1M4P-201ENST00000589199 287 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.58□□□□□ -1.84
SMARCA1P28370 AC107294.3-201ENST00000609211 526 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.58□□□□□ -1.84
SMARCA1P28370 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.57□□□□□ -1.84
SMARCA1P28370 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-37P-201ENST00000362692 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-11P-201ENST00000364234 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-7-201ENST00000364784 107 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms