Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC7.8□□□□□ -1.16
MSH5O43196 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
MSH5O43196 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH5O43196 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH5O43196 SNORA5.1-201ENST00000384275 131 ntBASIC7.8□□□□□ -1.16
MSH5O43196 MIR154-201ENST00000385243 84 ntBASIC7.8□□□□□ -1.16
MSH5O43196 AL627390.1-201ENST00000396055 340 ntBASIC7.8□□□□□ -1.16
MSH5O43196 AC069257.2-201ENST00000441819 155 ntBASIC7.8□□□□□ -1.16
MSH5O43196 RANP2-201ENST00000456833 229 ntBASIC7.8□□□□□ -1.16
MSH5O43196 RNU7-80P-201ENST00000459562 61 ntBASIC7.8□□□□□ -1.16
MSH5O43196 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC7.8□□□□□ -1.16
MSH5O43196 MIR7978-201ENST00000636158 59 ntBASIC7.8□□□□□ -1.16
MSH5O43196 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH5O43196 NLN-202ENST00000502464 8354 ntTSL 5 BASIC7.8□□□□□ -1.16
MSH5O43196 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
MSH5O43196 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH5O43196 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
MSH5O43196 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSH5O43196 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
MSH5O43196 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSH5O43196 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC7.79□□□□□ -1.16
MSH5O43196 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSH5O43196 SNORA25.4-201ENST00000363666 124 ntBASIC7.79□□□□□ -1.16
MSH5O43196 RNU6-1241P-201ENST00000384536 107 ntBASIC7.79□□□□□ -1.16
MSH5O43196 AL513477.1-202ENST00000417061 214 ntBASIC7.79□□□□□ -1.16
MSH5O43196 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC7.79□□□□□ -1.16
MSH5O43196 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC7.79□□□□□ -1.16
MSH5O43196 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC7.79□□□□□ -1.16
MSH5O43196 AL353149.1-201ENST00000610667 244 ntBASIC7.79□□□□□ -1.16
MSH5O43196 HOTTIP_3.1-201ENST00000619957 337 ntBASIC7.79□□□□□ -1.16
MSH5O43196 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC7.79□□□□□ -1.16
MSH5O43196 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSH5O43196 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC7.79□□□□□ -1.16
MSH5O43196 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC7.79□□□□□ -1.16
MSH5O43196 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC7.79□□□□□ -1.16
MSH5O43196 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
MSH5O43196 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSH5O43196 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSH5O43196 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSH5O43196 Y_RNA.621-201ENST00000411065 96 ntBASIC7.78□□□□□ -1.16
MSH5O43196 AL096829.1-201ENST00000413677 457 ntBASIC7.78□□□□□ -1.16
MSH5O43196 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC7.78□□□□□ -1.16
MSH5O43196 RNU6-1108P-201ENST00000516308 104 ntBASIC7.78□□□□□ -1.16
MSH5O43196 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC7.78□□□□□ -1.16
MSH5O43196 AL513043.2-201ENST00000573941 143 ntBASIC7.78□□□□□ -1.16
MSH5O43196 RN7SL703P-201ENST00000578485 302 ntBASIC7.78□□□□□ -1.16
MSH5O43196 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
MSH5O43196 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSH5O43196 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC7.78□□□□□ -1.16
MSH5O43196 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSH5O43196 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSH5O43196 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.17
MSH5O43196 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
MSH5O43196 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSH5O43196 AL159987.1-201ENST00000347911 293 ntBASIC7.77□□□□□ -1.17
MSH5O43196 RNA5SP46-201ENST00000362370 120 ntBASIC7.77□□□□□ -1.17
MSH5O43196 RNU6-630P-201ENST00000391258 106 ntBASIC7.77□□□□□ -1.17
MSH5O43196 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC7.77□□□□□ -1.17
MSH5O43196 UBL5P1-201ENST00000507979 193 ntBASIC7.77□□□□□ -1.17
MSH5O43196 AC074101.1-201ENST00000637861 241 ntBASIC7.77□□□□□ -1.17
MSH5O43196 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC7.77□□□□□ -1.17
MSH5O43196 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
MSH5O43196 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC7.76□□□□□ -1.17
MSH5O43196 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC7.76□□□□□ -1.17
MSH5O43196 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC7.76□□□□□ -1.17
MSH5O43196 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC7.76□□□□□ -1.17
MSH5O43196 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC7.76□□□□□ -1.17
MSH5O43196 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
MSH5O43196 HMGN2P31-201ENST00000432430 273 ntBASIC7.76□□□□□ -1.17
MSH5O43196 RPS17P2-201ENST00000461663 408 ntBASIC7.76□□□□□ -1.17
MSH5O43196 RN7SL269P-201ENST00000467795 305 ntBASIC7.76□□□□□ -1.17
MSH5O43196 RPS27P22-201ENST00000478056 241 ntBASIC7.76□□□□□ -1.17
MSH5O43196 SNORA18.7-201ENST00000516910 131 ntBASIC7.76□□□□□ -1.17
MSH5O43196 AP001880.2-201ENST00000538233 448 ntBASIC7.76□□□□□ -1.17
MSH5O43196 AC233702.9-201ENST00000581528 203 ntBASIC7.76□□□□□ -1.17
MSH5O43196 AC078899.2-201ENST00000595282 212 ntBASIC7.76□□□□□ -1.17
MSH5O43196 AL591926.8-201ENST00000616876 211 ntBASIC7.76□□□□□ -1.17
MSH5O43196 NEAT1_2.1-201ENST00000620525 105 ntBASIC7.76□□□□□ -1.17
MSH5O43196 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSH5O43196 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSH5O43196 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC7.76□□□□□ -1.17
MSH5O43196 AL731532.1-201ENST00000623972 4236 ntBASIC7.76□□□□□ -1.17
MSH5O43196 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSH5O43196 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSH5O43196 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC7.75□□□□□ -1.17
MSH5O43196 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
MSH5O43196 AL355596.1-201ENST00000565399 3996 ntBASIC7.75□□□□□ -1.17
MSH5O43196 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSH5O43196 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSH5O43196 KRTAP19-11P-201ENST00000439851 104 ntBASIC7.75□□□□□ -1.17
MSH5O43196 AL663074.2-201ENST00000440621 479 ntBASIC7.75□□□□□ -1.17
MSH5O43196 HMGN1P7-201ENST00000491722 313 ntBASIC7.75□□□□□ -1.17
MSH5O43196 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSH5O43196 AC002984.1-201ENST00000591692 448 ntBASIC7.75□□□□□ -1.17
MSH5O43196 MIR7155-201ENST00000615925 56 ntBASIC7.75□□□□□ -1.17
MSH5O43196 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
MSH5O43196 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
MSH5O43196 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
MSH5O43196 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSH5O43196 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC7.75□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 166.4 ms