Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX1P28360 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.47□□□□□ -1.69
MSX1P28360 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
MSX1P28360 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.69
MSX1P28360 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
MSX1P28360 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
MSX1P28360 AC107068.1-201ENST00000563286 4218 ntBASIC4.46□□□□□ -1.69
MSX1P28360 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.46□□□□□ -1.69
MSX1P28360 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSX1P28360 MAPK10-304ENST00000641341 3984 ntBASIC4.46□□□□□ -1.7
MSX1P28360 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
MSX1P28360 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSX1P28360 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.7
MSX1P28360 RNU6-199P-201ENST00000362954 107 ntBASIC4.46□□□□□ -1.7
MSX1P28360 Y_RNA.172-201ENST00000363765 102 ntBASIC4.46□□□□□ -1.7
MSX1P28360 RNU6-1056P-201ENST00000383996 107 ntBASIC4.46□□□□□ -1.7
MSX1P28360 RNU6-245P-201ENST00000384020 107 ntBASIC4.46□□□□□ -1.7
MSX1P28360 Y_RNA.420-201ENST00000384043 110 ntBASIC4.46□□□□□ -1.7
MSX1P28360 RNU6-1181P-201ENST00000384191 106 ntBASIC4.46□□□□□ -1.7
MSX1P28360 MIR325-201ENST00000385260 98 ntBASIC4.46□□□□□ -1.7
MSX1P28360 RNA5SP475-201ENST00000410568 110 ntBASIC4.46□□□□□ -1.7
MSX1P28360 RN7SKP53-201ENST00000411337 315 ntBASIC4.46□□□□□ -1.7
MSX1P28360 EIF4A1P3-201ENST00000411521 244 ntBASIC4.46□□□□□ -1.7
MSX1P28360 AL160275.2-201ENST00000412010 394 ntBASIC4.46□□□□□ -1.7
MSX1P28360 AC114755.2-201ENST00000413520 361 ntBASIC4.46□□□□□ -1.7
MSX1P28360 AC244670.1-201ENST00000436879 112 ntBASIC4.46□□□□□ -1.7
MSX1P28360 H2AFZP5-201ENST00000446960 382 ntBASIC4.46□□□□□ -1.7
MSX1P28360 AC079168.2-201ENST00000453977 416 ntBASIC4.46□□□□□ -1.7
MSX1P28360 AC007215.1-201ENST00000464893 276 ntBASIC4.46□□□□□ -1.7
MSX1P28360 AC091179.3-201ENST00000474761 144 ntBASIC4.46□□□□□ -1.7
MSX1P28360 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX1P28360 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC4.46□□□□□ -1.7
MSX1P28360 RNU4-57P-201ENST00000515980 135 ntBASIC4.46□□□□□ -1.7
MSX1P28360 SNORA31.23-201ENST00000517219 133 ntBASIC4.46□□□□□ -1.7
MSX1P28360 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.46□□□□□ -1.7
MSX1P28360 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC4.46□□□□□ -1.7
MSX1P28360 AC006380.1-201ENST00000603598 186 ntBASIC4.46□□□□□ -1.7
MSX1P28360 AL391358.1-201ENST00000605342 190 ntBASIC4.46□□□□□ -1.7
MSX1P28360 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
MSX1P28360 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX1P28360 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
MSX1P28360 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.46□□□□□ -1.7
MSX1P28360 AL391516.1-201ENST00000554380 2449 ntBASIC4.46□□□□□ -1.7
MSX1P28360 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
MSX1P28360 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX1P28360 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX1P28360 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX1P28360 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.46□□□□□ -1.7
MSX1P28360 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX1P28360 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSX1P28360 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.45□□□□□ -1.7
MSX1P28360 AC073073.2-201ENST00000609827 2578 ntBASIC4.45□□□□□ -1.7
MSX1P28360 Y_RNA.337-201ENST00000365312 102 ntBASIC4.45□□□□□ -1.7
MSX1P28360 RNU1-73P-201ENST00000383971 164 ntBASIC4.45□□□□□ -1.7
MSX1P28360 SNORA26.3-201ENST00000391119 136 ntBASIC4.45□□□□□ -1.7
MSX1P28360 RNA5SP113-201ENST00000410486 84 ntBASIC4.45□□□□□ -1.7
MSX1P28360 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.45□□□□□ -1.7
MSX1P28360 PTGES3P4-201ENST00000426243 356 ntBASIC4.45□□□□□ -1.7
MSX1P28360 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.45□□□□□ -1.7
MSX1P28360 PDCD5P2-201ENST00000507570 312 ntBASIC4.45□□□□□ -1.7
MSX1P28360 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSX1P28360 AL121932.1-201ENST00000605542 214 ntBASIC4.45□□□□□ -1.7
MSX1P28360 BMS1P21-201ENST00000634565 365 ntBASIC4.45□□□□□ -1.7
MSX1P28360 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.45□□□□□ -1.7
MSX1P28360 AP001273.1-201ENST00000624493 3152 ntBASIC4.45□□□□□ -1.7
MSX1P28360 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSX1P28360 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSX1P28360 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSX1P28360 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSX1P28360 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSX1P28360 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSX1P28360 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSX1P28360 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
MSX1P28360 AL357515.1-201ENST00000402967 542 ntBASIC4.44□□□□□ -1.7
MSX1P28360 FTH1P15-201ENST00000406984 280 ntBASIC4.44□□□□□ -1.7
MSX1P28360 AC096649.2-201ENST00000416186 393 ntBASIC4.44□□□□□ -1.7
MSX1P28360 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.44□□□□□ -1.7
MSX1P28360 HMGN2P30-201ENST00000423237 256 ntBASIC4.44□□□□□ -1.7
MSX1P28360 RPL21P66-201ENST00000426566 466 ntBASIC4.44□□□□□ -1.7
MSX1P28360 AC000111.2-201ENST00000448200 210 ntBASIC4.44□□□□□ -1.7
MSX1P28360 RPL37P4-201ENST00000448908 268 ntBASIC4.44□□□□□ -1.7
MSX1P28360 RPL23AP56-201ENST00000460778 453 ntBASIC4.44□□□□□ -1.7
MSX1P28360 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.44□□□□□ -1.7
MSX1P28360 RN7SL558P-201ENST00000497468 299 ntBASIC4.44□□□□□ -1.7
MSX1P28360 RNA5SP249-201ENST00000516127 99 ntBASIC4.44□□□□□ -1.7
MSX1P28360 RNU6-436P-201ENST00000516171 114 ntBASIC4.44□□□□□ -1.7
MSX1P28360 RNA5SP464-201ENST00000516251 108 ntBASIC4.44□□□□□ -1.7
MSX1P28360 CKS1BP7-201ENST00000522230 235 ntBASIC4.44□□□□□ -1.7
MSX1P28360 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSX1P28360 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.44□□□□□ -1.7
MSX1P28360 MIR5096-201ENST00000583713 70 ntBASIC4.44□□□□□ -1.7
MSX1P28360 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSX1P28360 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSX1P28360 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSX1P28360 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSX1P28360 TLK1P1-201ENST00000456760 2440 ntBASIC4.44□□□□□ -1.7
MSX1P28360 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSX1P28360 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSX1P28360 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSX1P28360 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms