Protein–RNA interactions for Protein: Q9UJU5

FOXD3, Forkhead box protein D3, humanhuman

Predicted RBP Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXD3Q9UJU5 AC233702.2-202ENST00000562547 291 ntBASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 AC093249.4-201ENST00000564755 259 ntBASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 AC209154.1-201ENST00000582156 337 ntBASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 MIR3609-201ENST00000582661 80 ntBASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 AL356575.1-201ENST00000603008 283 ntBASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 MIR7703-201ENST00000620784 77 ntBASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 AC006001.4-201ENST00000622243 395 ntBASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 MIR3199-2-201ENST00000636243 86 ntBASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 ANKRD36BP1-201ENST00000358576 1779 ntBASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXD3Q9UJU5 AC002543.1-201ENST00000299783 1954 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 SNORD113.2-201ENST00000364166 89 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 SNORA70.2-201ENST00000364506 135 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 Y_RNA.331-201ENST00000365267 102 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 Y_RNA.446-201ENST00000384178 104 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 MIR487A-201ENST00000385009 80 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 RNA5SP397-201ENST00000391323 118 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 RNA5SP239-201ENST00000410218 129 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 COX6CP10-201ENST00000416832 224 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 AP000705.1-201ENST00000454567 350 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 Y_RNA.638-201ENST00000459374 113 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 SNORD116-28-201ENST00000516123 91 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 Y_RNA.683-201ENST00000516508 93 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 AC087441.2-201ENST00000529141 262 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 AC011921.3-201ENST00000605540 361 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 AC125257.1-201ENST00000560400 2930 ntBASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXD3Q9UJU5 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 AL590240.1-201ENST00000334118 313 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 RNU6-774P-201ENST00000363238 107 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 RNU6-245P-201ENST00000384020 107 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 RNU6-213P-201ENST00000384051 104 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 MIR129-1-201ENST00000384972 72 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 AC005042.3-201ENST00000453230 174 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 snoU13.6-201ENST00000458785 104 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 RNA5SP310-201ENST00000459084 116 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 AC007215.1-201ENST00000464893 276 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 RN7SKP46-201ENST00000515942 234 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 RNU6-255P-201ENST00000516957 105 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 PARP1P2-201ENST00000556806 195 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 MIR3910-1-201ENST00000580936 111 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 MIR3136-201ENST00000583498 78 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 AC022441.3-201ENST00000605737 136 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 RBBP8P1-201ENST00000449447 1844 ntBASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXD3Q9UJU5 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms