Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 AC068254.2-201ENST00000623938 3577 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 Y_RNA.75-201ENST00000362927 97 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 AL357515.1-201ENST00000402967 542 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 AL035079.1-201ENST00000405210 287 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 CTSL3P-202ENST00000412179 788 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 ELOCP21-201ENST00000412558 336 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 BPY2DP-201ENST00000422208 265 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 COX6CP13-201ENST00000428703 226 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 IFNA11P-201ENST00000446352 526 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 AP000873.1-201ENST00000463987 400 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 AC091179.3-201ENST00000474761 144 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 RPS27AP9-201ENST00000477681 438 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 ACA59.2-201ENST00000517061 156 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 AP004242.1-201ENST00000533701 349 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 AC106871.1-201ENST00000568324 3102 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 OR51H2P-202ENST00000641424 3046 ntBASIC5.02□□□□□ -1.61
LIMD1Q9UGP4 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 RNU6-1130P-201ENST00000365434 107 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 SNORA18.3-201ENST00000384122 132 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 SNORA37-201ENST00000384504 129 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 PTMAP5-201ENST00000393073 333 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 EI24P2-201ENST00000397776 1076 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 RN7SKP53-201ENST00000411337 315 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 CYCSP48-201ENST00000417124 323 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 AC009963.1-201ENST00000417265 157 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 AC090525.1-201ENST00000479116 478 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 MIR3145-201ENST00000580727 82 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 AL008718.3-201ENST00000610217 321 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 AC005520.5-201ENST00000613926 164 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 AL034408.1-202ENST00000636088 415 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 MIR3199-2-201ENST00000636243 86 ntBASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
LIMD1Q9UGP4 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
LIMD1Q9UGP4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
LIMD1Q9UGP4 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
LIMD1Q9UGP4 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 AC063976.2-201ENST00000425667 3556 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 Y_RNA.568-201ENST00000384742 113 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 RNA5SP397-201ENST00000391323 118 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 AL591419.1-201ENST00000427423 339 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 AL162725.1-201ENST00000435405 301 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 AL450023.3-201ENST00000440592 271 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 BTF3P6-201ENST00000448054 499 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 AL162591.2-201ENST00000449634 317 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 NIP7P2-201ENST00000485801 544 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC5□□□□□ -1.61
LIMD1Q9UGP4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 SUMO2P18-201ENST00000518873 252 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 AC006199.1-201ENST00000548728 219 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms