Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 MIR3609-201ENST00000582661 80 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AP000787.2-201ENST00000604432 568 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC005000.2-201ENST00000605468 310 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC019193.3-201ENST00000609144 554 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AL161629.2-201ENST00000615347 275 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 MIR7112-201ENST00000616126 65 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AF127577.6-201ENST00000623352 2191 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC134503.1-201ENST00000633048 54 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC006504.1-201ENST00000562493 3666 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.132-201ENST00000363421 102 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 MIR517A-201ENST00000385001 87 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 RPL5P18-201ENST00000406671 891 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 RNA5SP31-201ENST00000411144 127 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 AL590664.1-201ENST00000448065 339 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 AL118496.2-201ENST00000448300 230 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 RPL37P4-201ENST00000448908 268 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 RPL7P42-201ENST00000481005 679 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 AC008962.1-201ENST00000605729 304 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 PISRT1.1-201ENST00000616930 107 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 AC002076.2-201ENST00000617362 122 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 MIR6076-201ENST00000617521 113 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 AC244517.12-201ENST00000623581 663 ntBASIC3.56□□□□□ -1.84
TDP1Q9NUW8 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TDP1Q9NUW8 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 Z83843.1-201ENST00000604070 3685 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 RNU1-18P-201ENST00000363062 164 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.128-201ENST00000363391 112 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 RNU6-1059P-201ENST00000363752 98 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.326-201ENST00000365176 113 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 RNU6-827P-201ENST00000365553 106 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.404-201ENST00000383978 102 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 RNU6-474P-201ENST00000384243 107 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 RNU6-72P-201ENST00000384285 79 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AP000567.1-201ENST00000406413 156 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AL117339.3-201ENST00000418733 162 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AC236972.1-201ENST00000433225 199 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 PCMTD1P1-201ENST00000455560 355 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 RN7SL93P-201ENST00000463035 293 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 RPS29P20-201ENST00000489592 171 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 MIR4276-201ENST00000584832 70 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AC022432.1-201ENST00000595739 310 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AC011494.1-201ENST00000596454 237 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AC133104.2-201ENST00000615272 193 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 MIR8057-201ENST00000620957 69 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 AF117829.1-206ENST00000621883 3802 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 MTND5P10-201ENST00000603719 1809 ntBASIC3.55□□□□□ -1.84
TDP1Q9NUW8 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TDP1Q9NUW8 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 HSPA8P1-201ENST00000425843 1833 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 MTND5P19-201ENST00000424872 1794 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 MIR518D-201ENST00000385014 87 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 MIR548P-201ENST00000408336 84 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 RNU6-325P-201ENST00000411132 105 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AC098831.1-201ENST00000440661 216 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 RPS29P31-201ENST00000446147 164 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 FTH1P25-201ENST00000447665 469 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AC115115.1-201ENST00000449927 248 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 RNU6-1037P-201ENST00000459571 107 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 RPS29P2-201ENST00000479278 136 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AL049830.2-201ENST00000480072 201 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms