Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 SNORD115-3-201ENST00000363100 82 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 RNU6-60P-201ENST00000364792 103 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 Y_RNA.311-201ENST00000365068 96 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 SNORD14D-201ENST00000384390 87 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 RN7SKP266-201ENST00000410232 287 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 RNA5SP501-201ENST00000410990 112 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
HLA-DMBP28068 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.1□□□□□ -2.23
HLA-DMBP28068 AC083875.1-201ENST00000419509 405 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 AL078601.1-201ENST00000444542 271 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 PRELID3BP1-201ENST00000457142 540 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 AL163540.1-201ENST00000485382 386 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 RPS3AP22-201ENST00000488297 769 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC1.1□□□□□ -2.23
HLA-DMBP28068 RNU6-143P-201ENST00000516942 93 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 SNORA44.1-201ENST00000517031 108 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.1□□□□□ -2.23
HLA-DMBP28068 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.1□□□□□ -2.23
HLA-DMBP28068 MIR4498-201ENST00000577599 66 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.1□□□□□ -2.23
HLA-DMBP28068 AC073410.2-201ENST00000603240 332 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 AP001981.2-201ENST00000603241 418 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 AL645939.4-201ENST00000604495 135 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 AC112220.2-201ENST00000605513 533 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 snoU13.31-201ENST00000607291 104 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC1.1□□□□□ -2.23
HLA-DMBP28068 RMST_6.1-201ENST00000611980 203 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 MIR7974-201ENST00000615835 79 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 AC099842.1-201ENST00000619919 596 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.1□□□□□ -2.23
HLA-DMBP28068 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 AP000943.4-201ENST00000622912 357 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 ZNF680P1-201ENST00000436625 1469 ntBASIC1.1□□□□□ -2.23
HLA-DMBP28068 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.1□□□□□ -2.23
HLA-DMBP28068 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 RNU1-62P-201ENST00000362599 164 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 RNU6-288P-201ENST00000363690 104 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 RNU4-13P-201ENST00000364019 141 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 RNU6-1164P-201ENST00000364428 107 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 RNU6-166P-201ENST00000384371 107 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 Y_RNA.534-201ENST00000384599 112 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 MIR186-201ENST00000384988 86 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 MIR30A-201ENST00000385092 71 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
HLA-DMBP28068 RNU11-3P-201ENST00000391111 133 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 RPS12P24-201ENST00000412619 387 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.09□□□□□ -2.23
HLA-DMBP28068 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.09□□□□□ -2.23
HLA-DMBP28068 AC009474.2-201ENST00000451383 136 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 AC114801.2-201ENST00000503825 781 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 FAM206BP-201ENST00000510179 541 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 RNU6-1053P-201ENST00000515930 101 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 RNU2-53P-201ENST00000516257 147 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 RNU1-92P-201ENST00000517017 135 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 AC087441.2-201ENST00000529141 262 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 DEFB108A-201ENST00000530110 222 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 ARL2BPP2-201ENST00000550907 489 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 DNAJC19P9-201ENST00000555084 351 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.09□□□□□ -2.23
HLA-DMBP28068 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.09□□□□□ -2.23
HLA-DMBP28068 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.09□□□□□ -2.23
HLA-DMBP28068 AC092574.1-201ENST00000609771 420 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 AC245297.2-201ENST00000610119 565 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.09□□□□□ -2.23
HLA-DMBP28068 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.09□□□□□ -2.23
HLA-DMBP28068 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
HLA-DMBP28068 RNU1-58P-201ENST00000362413 163 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 RNU6-701P-201ENST00000384059 107 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 RNU6-1274P-201ENST00000384557 107 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 MIR597-201ENST00000384968 97 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 MIR301A-201ENST00000385261 86 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 MIR320C1-201ENST00000408566 88 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 RNU6-174P-201ENST00000410406 106 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 RNU2-32P-201ENST00000411193 191 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 SRIP3-201ENST00000413200 219 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 AP1B1P2-201ENST00000416196 106 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 SDAD1P3-201ENST00000427380 333 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 VN1R108P-201ENST00000431580 830 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 AL591704.1-201ENST00000432574 275 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 SNRPGP13-201ENST00000442212 177 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 NEFMP1-201ENST00000443423 1006 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC003071.1-201ENST00000451219 789 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 RNA5SP57-201ENST00000459463 123 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 MED28P2-201ENST00000475771 317 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC098862.1-201ENST00000504991 413 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC109927.2-201ENST00000506416 303 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC021146.8-201ENST00000507455 733 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC079395.1-201ENST00000510981 262 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 PTP4A1P4-201ENST00000512479 322 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 SNORA31.24-201ENST00000517232 57 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms