Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNU6-220P-201ENST00000390919 107 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.22□□□□□ -2.37
COL6A3P12111 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
COL6A3P12111 HSPE1P21-201ENST00000438283 308 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC0.22□□□□□ -2.37
COL6A3P12111 Z77249.1-201ENST00000444622 1175 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AF213884.2-201ENST00000510417 903 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 RNU2-12P-201ENST00000517216 168 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC0.22□□□□□ -2.37
COL6A3P12111 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC0.22□□□□□ -2.37
COL6A3P12111 AP003066.2-201ENST00000529375 555 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AC010186.2-204ENST00000537668 439 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 MIR3609-201ENST00000582661 80 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC0.22□□□□□ -2.37
COL6A3P12111 AL021997.1-201ENST00000605757 193 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 DUXAP10-204ENST00000612052 616 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 CR848007.1-201ENST00000442354 1699 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 RNU6-880P-201ENST00000384526 107 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 Y_RNA.551-201ENST00000384661 102 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
COL6A3P12111 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC0.22□□□□□ -2.37
COL6A3P12111 AL035410.1-201ENST00000427409 427 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AC093106.2-201ENST00000428212 385 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 TPTE2P6-202ENST00000445572 1007 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 MRPS36P2-201ENST00000512569 299 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 NIFKP6-201ENST00000598115 845 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AL365204.3-201ENST00000612448 685 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AL356585.4-201ENST00000623078 1229 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AC006963.1-201ENST00000624003 1052 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AC015726.3-201ENST00000624501 418 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 Y_RNA.416-201ENST00000384014 113 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 U3.29-201ENST00000391296 212 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 MTND4P11-201ENST00000417020 1058 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC0.22□□□□□ -2.37
COL6A3P12111 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC0.22□□□□□ -2.37
COL6A3P12111 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.22□□□□□ -2.37
COL6A3P12111 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.22□□□□□ -2.37
COL6A3P12111 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.22□□□□□ -2.37
COL6A3P12111 RPS29P27-201ENST00000463711 170 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.22□□□□□ -2.37
COL6A3P12111 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC0.22□□□□□ -2.37
COL6A3P12111 AC004584.2-201ENST00000570407 410 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 MIR4299-201ENST00000577899 72 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 MIR3678-201ENST00000578455 94 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 MIR4499-201ENST00000584834 69 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AP001269.3-201ENST00000588718 329 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.22□□□□□ -2.37
COL6A3P12111 AC090132.2-201ENST00000615881 347 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 AL591926.4-201ENST00000616895 298 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.22□□□□□ -2.37
COL6A3P12111 MIR1246-201ENST00000636535 73 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 MIR371B-201ENST00000638082 66 ntBASIC0.22□□□□□ -2.37
COL6A3P12111 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC0.22□□□□□ -2.37
COL6A3P12111 MTND5P30-201ENST00000452896 1731 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 Y_RNA.246-201ENST00000364495 108 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 Y_RNA.452-201ENST00000384202 108 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 Y_RNA.577-201ENST00000384794 101 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.21□□□□□ -2.38
COL6A3P12111 U3.20-201ENST00000390909 217 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 AC023141.4-201ENST00000412031 328 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 HNRNPDLP3-201ENST00000456745 380 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 snoU13.7-201ENST00000459220 104 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.21□□□□□ -2.38
COL6A3P12111 AC136628.3-201ENST00000521868 290 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.21□□□□□ -2.38
COL6A3P12111 RNU4-5P-201ENST00000607255 135 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 AC084824.5-201ENST00000612009 413 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.21□□□□□ -2.38
COL6A3P12111 AC087821.2-201ENST00000637086 450 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC0.21□□□□□ -2.38
COL6A3P12111 Y_RNA.57-201ENST00000362806 113 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 RNU6-1331P-201ENST00000363658 106 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC0.21□□□□□ -2.38
COL6A3P12111 HSPE1P13-201ENST00000451143 297 ntBASIC0.21□□□□□ -2.38
COL6A3P12111 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC0.21□□□□□ -2.38
COL6A3P12111 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.21□□□□□ -2.38
COL6A3P12111 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC0.21□□□□□ -2.38
COL6A3P12111 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC0.21□□□□□ -2.38
COL6A3P12111 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.21□□□□□ -2.38
COL6A3P12111 RNU6-1328P-201ENST00000410938 106 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 EDDM3CP-201ENST00000415977 425 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 NDUFA5P10-201ENST00000432147 357 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AL354941.1-201ENST00000438600 464 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.2□□□□□ -2.38
COL6A3P12111 snoU13.28-201ENST00000459235 104 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 RPS26P55-201ENST00000471178 356 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AC079140.2-201ENST00000506193 142 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AC040926.1-201ENST00000530195 238 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AC007363.1-201ENST00000604736 620 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 FTX_3.1-201ENST00000610451 147 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AC004852.3-201ENST00000614131 326 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AC095031.1-201ENST00000623685 672 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 SNORA68.1-201ENST00000364537 132 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 Y_RNA.256-201ENST00000364594 104 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 RNU6-532P-201ENST00000384318 107 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 MIR325-201ENST00000385260 98 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms