Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 SNORA12.2-201ENST00000391040 156 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 RNA5SP332-201ENST00000391063 115 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 RNA5SP494-201ENST00000410653 129 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 CYCSP48-201ENST00000417124 323 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 AC079355.1-201ENST00000421770 223 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 RPL21P40-201ENST00000428586 483 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 AL358232.1-201ENST00000448030 501 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 snoU13.30-201ENST00000458951 104 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 RPS4XP22-201ENST00000480755 780 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 AC091874.1-201ENST00000511402 339 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 RNA5SP43-201ENST00000516559 110 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 MRPS36P4-201ENST00000534436 298 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 AC021231.3-201ENST00000558497 370 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 AC011447.4-201ENST00000587562 111 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 RPL23AP78-201ENST00000599928 470 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 AC064801.1-201ENST00000612025 407 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 MIR7153-201ENST00000637758 57 ntBASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CLRN3Q8NCR9 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.4□□□□□ -1.86
CLRN3Q8NCR9 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
CLRN3Q8NCR9 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CLRN3Q8NCR9 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CLRN3Q8NCR9 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
CLRN3Q8NCR9 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.4□□□□□ -1.86
CLRN3Q8NCR9 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CLRN3Q8NCR9 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 RNU1-32P-201ENST00000363937 159 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 SNORD115-32-201ENST00000364079 82 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 Y_RNA.605-201ENST00000410577 105 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 RPL23AP56-201ENST00000460778 453 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AP001324.2-201ENST00000461163 319 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 COPS8P2-201ENST00000473228 627 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 RPL23AP75-201ENST00000491601 451 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AC026726.1-201ENST00000512859 601 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AC006504.1-201ENST00000562493 3666 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 MIR5571-201ENST00000577998 113 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AC006557.5-201ENST00000603126 811 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AL590392.1-201ENST00000604960 446 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 RPL23AP88-201ENST00000605759 454 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 AC107294.3-201ENST00000609211 526 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 MIR1244-1-201ENST00000612829 85 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 MIR7702-201ENST00000621931 59 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 SNORA43.4-201ENST00000629559 138 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 MIR1244-3-201ENST00000635744 85 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 MIR1244-2-201ENST00000636449 85 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 MIR1244-4-202ENST00000636813 85 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 MTND4P1-201ENST00000457501 1466 ntBASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CLRN3Q8NCR9 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 RNU6-1285P-201ENST00000363480 105 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 RNU4-56P-201ENST00000364700 142 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 RNU4-42P-201ENST00000364738 142 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 CD24P4-201ENST00000382840 243 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 SNORA69.1-201ENST00000390904 137 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 SNORD66.1-201ENST00000391230 76 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 SAR1AP2-201ENST00000392696 594 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 AC002075.2-201ENST00000425207 252 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 AP000907.1-201ENST00000428428 510 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 RPL23AP1-201ENST00000428990 471 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 AL160004.2-201ENST00000432935 350 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 RN7SL303P-201ENST00000469773 251 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 AC097484.1-201ENST00000471148 389 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 RN7SL244P-201ENST00000493405 297 ntBASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.39□□□□□ -1.87
CLRN3Q8NCR9 PHBP14-201ENST00000512887 367 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms