Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 snoU109.2-201ENST00000459316 135 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 IGKV2-26-201ENST00000518305 343 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 SUB1P1-201ENST00000524415 382 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AL512310.1-201ENST00000548639 172 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC091544.4-201ENST00000555268 342 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC103810.1-201ENST00000579873 453 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 uc_338.34-201ENST00000617467 174 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 U6.42-201ENST00000618440 107 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC091903.1-201ENST00000624322 454 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 MIR1321-201ENST00000637766 79 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC093536.2-201ENST00000565257 1406 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RNY4P14-201ENST00000363656 96 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RNU6-395P-201ENST00000365662 106 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RNU6-877P-201ENST00000383868 107 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RNU1-109P-201ENST00000383960 147 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RNU4-47P-201ENST00000410876 114 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RN7SKP58-201ENST00000411010 305 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 NFU1P2-201ENST00000448700 469 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RPL37P4-201ENST00000448908 268 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RPS27AP10-201ENST00000496103 208 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RNU4-29P-201ENST00000515943 174 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RPPH1-2P-201ENST00000516688 293 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 RN7SKP40-201ENST00000517211 242 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AP002404.1-201ENST00000532005 451 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AL157687.1-201ENST00000554853 619 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 MIR4782-201ENST00000577987 79 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 MIR5692A1-201ENST00000580523 69 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AC010525.2-201ENST00000590920 195 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AC073539.2-201ENST00000597113 165 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AL645944.1-201ENST00000603857 493 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PDLIM3Q53GG5 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 Y_RNA.89-201ENST00000363031 102 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 RNU6-778P-201ENST00000363269 103 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 RNU6-371P-201ENST00000364283 108 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 RNU4-20P-201ENST00000365601 151 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 RNU6-45P-201ENST00000384471 107 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 RNU6-393P-201ENST00000384475 107 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 RNU6-1127P-201ENST00000384580 107 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 SNORA46-201ENST00000384762 135 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 MIR888-201ENST00000401186 77 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 RN7SKP123-201ENST00000410732 291 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 OR9R1P-201ENST00000412200 877 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 BMS1P22-201ENST00000414726 313 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AC245054.2-201ENST00000415639 319 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 MTCYBP5-201ENST00000423752 1135 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AC098614.2-201ENST00000426040 255 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AC092427.1-202ENST00000430569 476 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AC009296.1-201ENST00000443146 155 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AL360271.2-201ENST00000447710 161 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 MTND3P16-201ENST00000452205 344 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 RPL21P99-201ENST00000480369 423 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 FAM92A1P2-202ENST00000504766 877 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms