Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC012676.2-201ENST00000619258 186 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 U6.99-201ENST00000637524 83 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.76□□□□□ -2.29
FOXA3P55318 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.75□□□□□ -2.29
FOXA3P55318 AL391516.1-201ENST00000554380 2449 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 SNORD33-201ENST00000362761 85 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 U8.10-201ENST00000384260 133 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 RNU6-1274P-201ENST00000384557 107 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 RNU6-114P-201ENST00000384704 105 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC0.75□□□□□ -2.29
FOXA3P55318 AL139397.2-201ENST00000404529 772 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.75□□□□□ -2.29
FOXA3P55318 RPL23AP36-201ENST00000413895 458 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 MTCYBP15-201ENST00000433123 1127 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA3P55318 AC027119.1-201ENST00000440877 241 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 BRK1P2-201ENST00000442875 223 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA3P55318 AL133373.1-201ENST00000497098 94 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA3P55318 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA3P55318 RNU6-390P-201ENST00000516259 103 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
FOXA3P55318 ZKSCAN7P1-201ENST00000543668 673 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.75□□□□□ -2.29
FOXA3P55318 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA3P55318 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC0.75□□□□□ -2.29
FOXA3P55318 AL583856.2-201ENST00000606298 543 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 AC100814.1-201ENST00000606963 623 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 AC243773.3-201ENST00000613270 256 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 AC092140.2-201ENST00000618027 521 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 AC120349.2-201ENST00000625002 298 ntBASIC0.75□□□□□ -2.29
FOXA3P55318 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
FOXA3P55318 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
FOXA3P55318 DLEU2_6.3-201ENST00000340052 136 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 SNORA7.1-201ENST00000363750 139 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 RNU6-343P-201ENST00000364709 104 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 RNA5SP213-201ENST00000391031 106 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 PIGPP2-201ENST00000411569 458 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.74□□□□□ -2.29
FOXA3P55318 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC0.74□□□□□ -2.29
FOXA3P55318 AC027644.1-201ENST00000419595 298 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC0.74□□□□□ -2.29
FOXA3P55318 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC0.74□□□□□ -2.29
FOXA3P55318 AL591806.2-201ENST00000433122 173 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC0.74□□□□□ -2.29
FOXA3P55318 MTATP6P30-201ENST00000443540 664 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.74□□□□□ -2.29
FOXA3P55318 AC009474.2-201ENST00000451383 136 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC0.74□□□□□ -2.29
FOXA3P55318 RPL39P28-201ENST00000465655 155 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.74□□□□□ -2.29
FOXA3P55318 RNU2-53P-201ENST00000516257 147 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 RN7SKP258-201ENST00000517151 304 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 AP000889.1-201ENST00000530968 660 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC0.74□□□□□ -2.29
FOXA3P55318 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC0.74□□□□□ -2.29
FOXA3P55318 AC018630.3-201ENST00000542637 96 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.74□□□□□ -2.29
FOXA3P55318 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.74□□□□□ -2.29
FOXA3P55318 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.74□□□□□ -2.29
FOXA3P55318 SUB1P4-201ENST00000566062 339 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 MIR4782-201ENST00000577987 79 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 AL353997.4-201ENST00000586196 166 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.74□□□□□ -2.29
FOXA3P55318 AC004908.3-201ENST00000610248 625 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 DLEU2_6.2-201ENST00000620994 136 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 AC233981.2-201ENST00000611524 1614 ntBASIC0.74□□□□□ -2.29
FOXA3P55318 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
FOXA3P55318 ICE2P2-201ENST00000483823 2787 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
FOXA3P55318 RNU6-1010P-201ENST00000362757 107 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 RNU6-23P-201ENST00000363283 107 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 RNU6-188P-201ENST00000364207 107 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 SNORD1A-201ENST00000364968 72 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 SNORA29-201ENST00000384183 140 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 RNU6-1207P-201ENST00000384343 107 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 SNORA17.3-201ENST00000391159 129 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 UBE2V1P15-201ENST00000407776 448 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 RNU4-62P-201ENST00000410125 130 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 RNU2-42P-201ENST00000410697 113 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 RPL21P90-201ENST00000415692 466 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.73□□□□□ -2.29
FOXA3P55318 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC0.73□□□□□ -2.29
FOXA3P55318 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC0.73□□□□□ -2.29
FOXA3P55318 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.73□□□□□ -2.29
FOXA3P55318 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC0.73□□□□□ -2.29
FOXA3P55318 RPS23P4-201ENST00000487908 423 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.73□□□□□ -2.29
FOXA3P55318 UBL5P1-201ENST00000507979 193 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC0.73□□□□□ -2.29
FOXA3P55318 AC093809.1-201ENST00000509155 340 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC0.73□□□□□ -2.29
FOXA3P55318 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.73□□□□□ -2.29
FOXA3P55318 RN7SKP256-201ENST00000517201 314 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC0.73□□□□□ -2.29
FOXA3P55318 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC0.73□□□□□ -2.29
FOXA3P55318 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.73□□□□□ -2.29
FOXA3P55318 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.73□□□□□ -2.29
FOXA3P55318 DPPA3P3-201ENST00000603842 430 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms