Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
COL6A1P12109 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
COL6A1P12109 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A1P12109 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A1P12109 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A1P12109 RNU6-288P-201ENST00000363690 104 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 RNU6-266P-201ENST00000364225 107 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 RNU6-99P-201ENST00000364721 107 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 SET-203ENST00000372688 801 ntTSL 2 BASIC4.1□□□□□ -1.75
COL6A1P12109 SNORA1.3-201ENST00000384676 136 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 UBA52P6-201ENST00000399822 382 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 RNU6-101P-201ENST00000410323 104 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 AC009310.1-201ENST00000414414 451 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 UBE2D3P2-201ENST00000424409 445 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 AL590383.1-201ENST00000428602 75 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 USP9YP30-201ENST00000430729 455 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC4.1□□□□□ -1.75
COL6A1P12109 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.1□□□□□ -1.75
COL6A1P12109 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.1□□□□□ -1.75
COL6A1P12109 RNU6-475P-201ENST00000516073 104 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 RN7SKP83-201ENST00000516512 178 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.1□□□□□ -1.75
COL6A1P12109 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4.1□□□□□ -1.75
COL6A1P12109 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.1□□□□□ -1.75
COL6A1P12109 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
COL6A1P12109 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.1□□□□□ -1.75
COL6A1P12109 AC092447.9-201ENST00000603395 144 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 AL442067.1-201ENST00000613261 223 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A1P12109 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
COL6A1P12109 AC008568.2-201ENST00000623862 2313 ntBASIC4.1□□□□□ -1.75
COL6A1P12109 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A1P12109 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL6A1P12109 RNU6-1222P-201ENST00000384615 107 ntBASIC4.09□□□□□ -1.75
COL6A1P12109 RNU6-14P-201ENST00000384630 106 ntBASIC4.09□□□□□ -1.75
COL6A1P12109 SNORA41-201ENST00000384675 132 ntBASIC4.09□□□□□ -1.75
COL6A1P12109 HSPE1P8-201ENST00000406997 288 ntBASIC4.09□□□□□ -1.75
COL6A1P12109 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.09□□□□□ -1.75
COL6A1P12109 AL356867.1-201ENST00000429623 299 ntBASIC4.09□□□□□ -1.75
COL6A1P12109 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.09□□□□□ -1.75
COL6A1P12109 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC4.09□□□□□ -1.75
COL6A1P12109 SNORA70.16-201ENST00000516390 95 ntBASIC4.09□□□□□ -1.75
COL6A1P12109 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.09□□□□□ -1.75
COL6A1P12109 MIR5047-201ENST00000579212 100 ntBASIC4.09□□□□□ -1.75
COL6A1P12109 MIR4325-201ENST00000583049 90 ntBASIC4.09□□□□□ -1.75
COL6A1P12109 AC002044.1-201ENST00000606707 158 ntBASIC4.09□□□□□ -1.75
COL6A1P12109 MIR7851-201ENST00000610611 160 ntBASIC4.09□□□□□ -1.75
COL6A1P12109 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.09□□□□□ -1.75
COL6A1P12109 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL6A1P12109 AC009812.4-201ENST00000569134 1805 ntBASIC4.09□□□□□ -1.76
COL6A1P12109 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A1P12109 FAM35BP-202ENST00000497389 3337 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A1P12109 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.08□□□□□ -1.76
COL6A1P12109 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
COL6A1P12109 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A1P12109 Y_RNA.39-201ENST00000362620 98 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 RNU6-238P-201ENST00000363313 106 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 Y_RNA.152-201ENST00000363578 100 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 Y_RNA.153-201ENST00000363615 91 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A1P12109 RNU6-1077P-201ENST00000410506 102 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 RNU6-55P-201ENST00000411092 107 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.08□□□□□ -1.76
COL6A1P12109 CEP57L1P1-201ENST00000430943 1201 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.08□□□□□ -1.76
COL6A1P12109 Z98949.2-201ENST00000440996 144 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A1P12109 RPL21P41-201ENST00000459863 264 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A1P12109 RNA5SP384-201ENST00000516615 116 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.08□□□□□ -1.76
COL6A1P12109 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.08□□□□□ -1.76
COL6A1P12109 AC104695.3-201ENST00000604052 296 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.08□□□□□ -1.76
COL6A1P12109 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
COL6A1P12109 AP001486.2-201ENST00000561652 5113 ntBASIC4.08□□□□□ -1.76
COL6A1P12109 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A1P12109 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
COL6A1P12109 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
COL6A1P12109 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A1P12109 RHOT1P2-201ENST00000366423 333 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
COL6A1P12109 Y_RNA.424-201ENST00000384063 103 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 Y_RNA.645-201ENST00000391229 102 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 RNU2-23P-201ENST00000410545 195 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC4.07□□□□□ -1.76
COL6A1P12109 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.07□□□□□ -1.76
COL6A1P12109 AL590664.1-201ENST00000448065 339 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 RN7SL330P-201ENST00000469709 307 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.07□□□□□ -1.76
COL6A1P12109 AC068781.1-201ENST00000488231 618 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 RPL31P61-201ENST00000496160 376 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 AC025554.1-201ENST00000505641 188 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 AC009901.1-201ENST00000506703 541 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 AC092436.3-201ENST00000511788 257 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 PHBP14-201ENST00000512887 367 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 SNORA31.3-201ENST00000516029 96 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 SNORA70.18-201ENST00000516696 98 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 SNORD59.2-201ENST00000516873 68 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms