Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SNRPEP7-201ENST00000438350 220 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AL117351.1-201ENST00000438864 766 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.07□□□□□ -2.24
SDCBPO00560 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.07□□□□□ -2.24
SDCBPO00560 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.07□□□□□ -2.24
SDCBPO00560 AL441985.1-201ENST00000457727 251 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.07□□□□□ -2.24
SDCBPO00560 RNU7-59P-201ENST00000459101 61 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 RN7SKP210-201ENST00000459176 261 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 RPS3AP22-201ENST00000488297 769 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AC098862.1-201ENST00000504991 413 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.07□□□□□ -2.24
SDCBPO00560 AC112198.4-201ENST00000515450 351 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 RNU5B-3P-201ENST00000516601 115 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.07□□□□□ -2.24
SDCBPO00560 AP004247.1-201ENST00000531556 1289 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 PSMA3P-201ENST00000555485 635 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AC136619.2-201ENST00000563361 631 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AC093249.1-201ENST00000567049 203 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AC025678.1-201ENST00000567861 338 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 MIR4782-201ENST00000577987 79 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC1.07□□□□□ -2.24
SDCBPO00560 RPL30P11-203ENST00000598995 310 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AL670379.10-201ENST00000604330 253 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AL670379.9-201ENST00000605428 253 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AC131235.4-201ENST00000609288 620 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.07□□□□□ -2.24
SDCBPO00560 AL353997.5-201ENST00000618886 171 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 DLEU2_6.2-201ENST00000620994 136 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AC017037.3-201ENST00000625016 472 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AC126544.2-201ENST00000625174 749 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.07□□□□□ -2.24
SDCBPO00560 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SDCBPO00560 AL161722.3-201ENST00000605789 2983 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 Y_RNA.110-201ENST00000363220 99 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 RNU6-338P-201ENST00000383888 105 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 Y_RNA.472-201ENST00000384322 102 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 MIR150-201ENST00000385048 84 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 FCF1P10-201ENST00000407590 479 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 MTCO1P17-201ENST00000411522 491 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC1.06□□□□□ -2.24
SDCBPO00560 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.06□□□□□ -2.24
SDCBPO00560 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.06□□□□□ -2.24
SDCBPO00560 ZNF736P11Y-201ENST00000442535 1213 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 AC009474.2-201ENST00000451383 136 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 RPS29P29-201ENST00000456396 171 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 FCF1P6-201ENST00000456841 595 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC1.06□□□□□ -2.24
SDCBPO00560 AC114801.2-201ENST00000503825 781 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.06□□□□□ -2.24
SDCBPO00560 RN7SKP179-201ENST00000516126 217 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC1.06□□□□□ -2.24
SDCBPO00560 IMMP1LP2-201ENST00000552954 492 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 AC015712.3-201ENST00000559380 164 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SDCBPO00560 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.06□□□□□ -2.24
SDCBPO00560 AC007363.1-201ENST00000604736 620 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 AC021646.1-201ENST00000605469 484 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 AL050343.2-201ENST00000607338 280 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 AL021368.1-201ENST00000607490 540 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC1.06□□□□□ -2.24
SDCBPO00560 AC090970.3-201ENST00000612566 866 ntBASIC1.06□□□□□ -2.24
SDCBPO00560 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.06□□□□□ -2.24
SDCBPO00560 MIR424-201ENST00000362227 98 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 RNU6-661P-201ENST00000362409 107 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 RNU6-288P-201ENST00000363690 104 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 RNU11-3P-201ENST00000391111 133 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 SNORA17.3-201ENST00000391159 129 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.05□□□□□ -2.24
SDCBPO00560 MIR1302-8-201ENST00000408342 128 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 MTCO2P25-201ENST00000447065 681 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.05□□□□□ -2.24
SDCBPO00560 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.05□□□□□ -2.24
SDCBPO00560 RPL37P6-201ENST00000460682 294 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 SUMO2P5-201ENST00000506790 245 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC1.05□□□□□ -2.24
SDCBPO00560 SNORA31.19-201ENST00000517079 126 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.05□□□□□ -2.24
SDCBPO00560 MIR4421-201ENST00000578133 69 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 AC112220.2-201ENST00000605513 533 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 AL158211.2-201ENST00000607282 395 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 AC008121.3-201ENST00000618726 433 ntBASIC1.05□□□□□ -2.24
SDCBPO00560 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.05□□□□□ -2.24
SDCBPO00560 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.05□□□□□ -2.24
SDCBPO00560 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.04□□□□□ -2.24
SDCBPO00560 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.04□□□□□ -2.24
SDCBPO00560 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
SDCBPO00560 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.04□□□□□ -2.24
SDCBPO00560 RNU6-1164P-201ENST00000364428 107 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 Y_RNA.311-201ENST00000365068 96 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 SNORA75B-201ENST00000384053 137 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 RNU6-166P-201ENST00000384371 107 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 SNORA40C-201ENST00000391285 128 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 RNU4-62P-201ENST00000410125 130 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 RNA5SP501-201ENST00000410990 112 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 AC009310.1-201ENST00000414414 451 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 AC083875.1-201ENST00000419509 405 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC1.04□□□□□ -2.24
SDCBPO00560 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms