Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 AC244107.2-201ENST00000611773 76 ntBASIC4.79□□□□□ -1.64
FOXC1Q12948 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXC1Q12948 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
FOXC1Q12948 AC074140.1-201ENST00000621617 208 ntBASIC4.79□□□□□ -1.64
FOXC1Q12948 U6.99-201ENST00000637524 83 ntBASIC4.79□□□□□ -1.64
FOXC1Q12948 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.79□□□□□ -1.64
FOXC1Q12948 MUC2-202ENST00000613187 4845 ntBASIC4.79□□□□□ -1.64
FOXC1Q12948 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
FOXC1Q12948 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXC1Q12948 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXC1Q12948 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
FOXC1Q12948 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
FOXC1Q12948 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.79□□□□□ -1.64
FOXC1Q12948 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
FOXC1Q12948 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXC1Q12948 TLK1P1-201ENST00000456760 2440 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
FOXC1Q12948 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
FOXC1Q12948 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
FOXC1Q12948 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
FOXC1Q12948 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
FOXC1Q12948 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXC1Q12948 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.78□□□□□ -1.64
FOXC1Q12948 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
FOXC1Q12948 SNORD56.1-201ENST00000362913 68 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 SNORA70E-201ENST00000384492 135 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 RNU6-136P-201ENST00000384663 107 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 RNU6-813P-201ENST00000384691 107 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 RNA5SP171-201ENST00000391071 115 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 RNU6-383P-201ENST00000410864 94 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 AC009237.10-201ENST00000414112 510 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXC1Q12948 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.78□□□□□ -1.64
FOXC1Q12948 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.78□□□□□ -1.64
FOXC1Q12948 AC006445.2-201ENST00000510061 472 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 MIR2116-201ENST00000517221 80 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.78□□□□□ -1.64
FOXC1Q12948 PRELID2P1-201ENST00000552837 301 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 MIR4716-201ENST00000579628 84 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXC1Q12948 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.78□□□□□ -1.64
FOXC1Q12948 AC019159.1-201ENST00000605094 187 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 AC090132.2-201ENST00000615881 347 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
FOXC1Q12948 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
FOXC1Q12948 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
FOXC1Q12948 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXC1Q12948 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXC1Q12948 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
FOXC1Q12948 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC4.78□□□□□ -1.64
FOXC1Q12948 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
FOXC1Q12948 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
FOXC1Q12948 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.77□□□□□ -1.65
FOXC1Q12948 AL133383.2-201ENST00000622958 2336 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.77□□□□□ -1.65
FOXC1Q12948 RNU6-508P-201ENST00000363231 103 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 SNORA51.5-201ENST00000384126 131 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 MIR544A-201ENST00000384855 91 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 MIR670-201ENST00000390142 98 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 Y_RNA.622-201ENST00000411091 108 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 AC007919.1-201ENST00000429380 217 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 SNRPGP7-201ENST00000469016 106 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC4.77□□□□□ -1.65
FOXC1Q12948 RN7SKP43-201ENST00000516173 320 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 Y_RNA.690-201ENST00000516603 95 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 RNU6-1183P-201ENST00000517054 60 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 LINC00933-203ENST00000559812 219 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.77□□□□□ -1.65
FOXC1Q12948 MIR4512-201ENST00000583257 77 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 AL359198.2-201ENST00000611836 194 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 U73479.1-201ENST00000618062 168 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 AC134878.1-201ENST00000619901 243 ntBASIC4.77□□□□□ -1.65
FOXC1Q12948 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
FOXC1Q12948 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
FOXC1Q12948 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
FOXC1Q12948 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
FOXC1Q12948 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
FOXC1Q12948 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
FOXC1Q12948 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
FOXC1Q12948 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.76□□□□□ -1.65
FOXC1Q12948 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
FOXC1Q12948 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
FOXC1Q12948 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC4.76□□□□□ -1.65
FOXC1Q12948 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
FOXC1Q12948 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
FOXC1Q12948 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
FOXC1Q12948 SNORD113.2-201ENST00000364166 89 ntBASIC4.76□□□□□ -1.65
FOXC1Q12948 RNU6-309P-201ENST00000364573 106 ntBASIC4.76□□□□□ -1.65
FOXC1Q12948 RNA5SP509-201ENST00000364577 119 ntBASIC4.76□□□□□ -1.65
FOXC1Q12948 MIR450A2-201ENST00000385022 100 ntBASIC4.76□□□□□ -1.65
FOXC1Q12948 SNORA11.1-201ENST00000408133 129 ntBASIC4.76□□□□□ -1.65
FOXC1Q12948 RPEP3-201ENST00000425462 676 ntBASIC4.76□□□□□ -1.65
FOXC1Q12948 BX323845.1-201ENST00000432417 179 ntBASIC4.76□□□□□ -1.65
FOXC1Q12948 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.76□□□□□ -1.65
FOXC1Q12948 AC016831.4-201ENST00000438302 307 ntBASIC4.76□□□□□ -1.65
FOXC1Q12948 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.76□□□□□ -1.65
FOXC1Q12948 KC877373.1-201ENST00000479066 408 ntBASIC4.76□□□□□ -1.65
FOXC1Q12948 AC006517.1-201ENST00000480485 328 ntBASIC4.76□□□□□ -1.65
FOXC1Q12948 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms