Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
CHD3Q12873 AC021739.1-201ENST00000559631 174 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 AC023825.1-201ENST00000566704 1030 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 MIR3912-201ENST00000577566 105 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 AL078605.1-201ENST00000603529 500 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 AL020996.3-201ENST00000606617 222 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.96□□□□□ -2.26
CHD3Q12873 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.96□□□□□ -2.26
CHD3Q12873 RNU1-58P-201ENST00000362413 163 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 SNORA25.8-201ENST00000364831 128 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 RNU6-1105P-201ENST00000384774 107 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 RNU11-3P-201ENST00000391111 133 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
CHD3Q12873 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
CHD3Q12873 AC027644.1-201ENST00000419595 298 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.96□□□□□ -2.26
CHD3Q12873 ELOCP14-201ENST00000428070 331 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 ELOCP7-201ENST00000439968 331 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 DDX3P2-201ENST00000446138 111 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 RPL7P55-201ENST00000450522 746 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC0.96□□□□□ -2.26
CHD3Q12873 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.96□□□□□ -2.26
CHD3Q12873 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC0.96□□□□□ -2.26
CHD3Q12873 AC139453.3-201ENST00000493276 369 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 MTCYBP16-201ENST00000509187 1129 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 RNU6-840P-201ENST00000517275 65 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 MTCO3P15-201ENST00000526563 574 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 SUB1P4-201ENST00000566062 339 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 VN1R107P-201ENST00000601784 209 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 AC009237.15-201ENST00000610252 501 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 AC097655.1-201ENST00000635075 318 ntBASIC0.96□□□□□ -2.26
CHD3Q12873 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
CHD3Q12873 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
CHD3Q12873 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.95□□□□□ -2.26
CHD3Q12873 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC0.95□□□□□ -2.26
CHD3Q12873 MTATP6P27-201ENST00000416987 621 ntBASIC0.95□□□□□ -2.26
CHD3Q12873 RPL30P4-201ENST00000429309 333 ntBASIC0.95□□□□□ -2.26
CHD3Q12873 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC0.95□□□□□ -2.26
CHD3Q12873 MTND2P30-201ENST00000456663 382 ntBASIC0.95□□□□□ -2.26
CHD3Q12873 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC0.95□□□□□ -2.26
CHD3Q12873 ARL2BPP4-201ENST00000506854 471 ntBASIC0.95□□□□□ -2.26
CHD3Q12873 SNORA25.11-201ENST00000515935 105 ntBASIC0.95□□□□□ -2.26
CHD3Q12873 HIGD1AP17-201ENST00000554576 276 ntBASIC0.95□□□□□ -2.26
CHD3Q12873 AL356432.3-201ENST00000568952 465 ntBASIC0.95□□□□□ -2.26
CHD3Q12873 MIR4295-201ENST00000585286 85 ntBASIC0.95□□□□□ -2.26
CHD3Q12873 AL133445.2-201ENST00000611191 527 ntBASIC0.95□□□□□ -2.26
CHD3Q12873 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC0.95□□□□□ -2.26
CHD3Q12873 RNU6-529P-201ENST00000363383 104 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 RNU6-288P-201ENST00000363690 104 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 Y_RNA.251-201ENST00000364551 99 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 RNU6-114P-201ENST00000384704 105 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC0.94□□□□□ -2.26
CHD3Q12873 MIR1283-2-201ENST00000408621 87 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC0.94□□□□□ -2.26
CHD3Q12873 AC005534.2-201ENST00000431047 433 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AL691517.1-201ENST00000440833 1235 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 MTATP6P30-201ENST00000443540 664 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 MTND1P9-201ENST00000453775 944 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD3Q12873 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD3Q12873 AC093249.1-201ENST00000567049 203 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 ADAM3B-201ENST00000569937 840 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 MIR4714-201ENST00000580728 77 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC243960.4-201ENST00000600532 288 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC011451.2-201ENST00000604303 598 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.94□□□□□ -2.26
CHD3Q12873 AL078604.3-201ENST00000615580 211 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC010975.3-201ENST00000618727 978 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 RNU6-223P-201ENST00000362830 107 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 RNU6-778P-201ENST00000363269 103 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 RNU5E-8P-201ENST00000363502 116 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 RNU6-878P-201ENST00000384578 110 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD3Q12873 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 RPS27P16-201ENST00000425758 201 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 DEFB130D-201ENST00000426866 237 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC0.94□□□□□ -2.26
CHD3Q12873 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD3Q12873 AL161788.1-201ENST00000441805 169 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 RPL23AP35-201ENST00000451906 501 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC108059.3-201ENST00000456388 214 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC021382.1-201ENST00000483523 359 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC018437.1-201ENST00000492214 406 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD3Q12873 AC027338.1-201ENST00000514840 825 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 RNU5B-3P-201ENST00000516601 115 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 AC136619.2-201ENST00000563361 631 ntBASIC0.94□□□□□ -2.26
CHD3Q12873 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD3Q12873 AC068700.1-201ENST00000565862 3754 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 AC009541.1-201ENST00000438279 2662 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 MIR373-201ENST00000362273 69 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.93□□□□□ -2.26
CHD3Q12873 MIR561-201ENST00000385216 97 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 AL590084.2-201ENST00000401481 382 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC0.93□□□□□ -2.26
CHD3Q12873 AL353706.1-201ENST00000436728 494 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
CHD3Q12873 AC093852.1-201ENST00000503587 266 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC0.93□□□□□ -2.26
CHD3Q12873 AC121161.1-201ENST00000510606 652 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms