Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX1P28360 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.56□□□□□ -1.68
MSX1P28360 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.56□□□□□ -1.68
MSX1P28360 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
MSX1P28360 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX1P28360 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX1P28360 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
MSX1P28360 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.56□□□□□ -1.68
MSX1P28360 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX1P28360 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.55□□□□□ -1.68
MSX1P28360 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.55□□□□□ -1.68
MSX1P28360 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
MSX1P28360 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.55□□□□□ -1.68
MSX1P28360 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSX1P28360 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
MSX1P28360 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
MSX1P28360 AC118273.1-201ENST00000525324 3006 ntBASIC4.55□□□□□ -1.68
MSX1P28360 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.55□□□□□ -1.68
MSX1P28360 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSX1P28360 SNORD56.1-201ENST00000362913 68 ntBASIC4.55□□□□□ -1.68
MSX1P28360 SNORA73.1-201ENST00000363107 205 ntBASIC4.55□□□□□ -1.68
MSX1P28360 RNA5SP428-201ENST00000365129 132 ntBASIC4.55□□□□□ -1.68
MSX1P28360 RNU4-11P-201ENST00000365287 132 ntBASIC4.55□□□□□ -1.68
MSX1P28360 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
MSX1P28360 RAB28P5-201ENST00000427490 651 ntBASIC4.55□□□□□ -1.68
MSX1P28360 RPL34P20-201ENST00000442771 351 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC011753.3-201ENST00000443436 406 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC009237.8-201ENST00000445492 379 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX1P28360 PTMAP3-201ENST00000447474 330 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.55□□□□□ -1.68
MSX1P28360 Y_RNA.637-201ENST00000459424 114 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC091179.1-201ENST00000461606 579 ntBASIC4.55□□□□□ -1.68
MSX1P28360 SNRPGP7-201ENST00000469016 106 ntBASIC4.55□□□□□ -1.68
MSX1P28360 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSX1P28360 RN7SL481P-201ENST00000477764 299 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC008897.1-201ENST00000494006 347 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC140172.1-201ENST00000502928 141 ntBASIC4.55□□□□□ -1.68
MSX1P28360 YWHAEP4-201ENST00000505390 198 ntBASIC4.55□□□□□ -1.68
MSX1P28360 RN7SKP276-201ENST00000516242 268 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX1P28360 DEFB131C-201ENST00000528817 165 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.55□□□□□ -1.68
MSX1P28360 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.55□□□□□ -1.68
MSX1P28360 MIR4431-201ENST00000579990 94 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC090616.3-201ENST00000582184 217 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC019159.1-201ENST00000605094 187 ntBASIC4.55□□□□□ -1.68
MSX1P28360 AC091932.3-201ENST00000624223 323 ntBASIC4.55□□□□□ -1.68
MSX1P28360 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSX1P28360 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
MSX1P28360 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSX1P28360 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
MSX1P28360 AC063976.2-201ENST00000425667 3556 ntBASIC4.54□□□□□ -1.68
MSX1P28360 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
MSX1P28360 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX1P28360 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX1P28360 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.54□□□□□ -1.68
MSX1P28360 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX1P28360 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX1P28360 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.54□□□□□ -1.68
MSX1P28360 RNU6-1141P-201ENST00000364520 107 ntBASIC4.54□□□□□ -1.68
MSX1P28360 SNORA70.10-201ENST00000384515 134 ntBASIC4.54□□□□□ -1.68
MSX1P28360 RNU6-381P-201ENST00000391259 108 ntBASIC4.54□□□□□ -1.68
MSX1P28360 AC074117.2-201ENST00000417130 397 ntBASIC4.54□□□□□ -1.68
MSX1P28360 AC104333.2-201ENST00000422630 192 ntBASIC4.54□□□□□ -1.68
MSX1P28360 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.54□□□□□ -1.68
MSX1P28360 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.54□□□□□ -1.68
MSX1P28360 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.54□□□□□ -1.68
MSX1P28360 AC074290.1-201ENST00000448883 135 ntBASIC4.54□□□□□ -1.68
MSX1P28360 MTATP6P7-201ENST00000453315 681 ntBASIC4.54□□□□□ -1.68
MSX1P28360 RN7SL517P-201ENST00000462240 305 ntBASIC4.54□□□□□ -1.68
MSX1P28360 HMGB1P22-201ENST00000505315 124 ntBASIC4.54□□□□□ -1.68
MSX1P28360 RPL23AP53-201ENST00000521854 457 ntBASIC4.54□□□□□ -1.68
MSX1P28360 AC100767.1-201ENST00000528178 123 ntBASIC4.54□□□□□ -1.68
MSX1P28360 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC4.54□□□□□ -1.68
MSX1P28360 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX1P28360 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX1P28360 MARK2P15-201ENST00000432204 2186 ntBASIC4.54□□□□□ -1.68
MSX1P28360 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX1P28360 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.54□□□□□ -1.68
MSX1P28360 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSX1P28360 SDAD1P1-202ENST00000524156 2051 ntBASIC4.53□□□□□ -1.68
MSX1P28360 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSX1P28360 NEAT1-202ENST00000501122 22743 ntBASIC4.53□□□□□ -1.68
MSX1P28360 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
MSX1P28360 ANKRD30BP1-201ENST00000451052 2186 ntBASIC4.53□□□□□ -1.68
MSX1P28360 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
MSX1P28360 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSX1P28360 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSX1P28360 RNU6-834P-201ENST00000362367 110 ntBASIC4.53□□□□□ -1.68
MSX1P28360 Y_RNA.179-201ENST00000363844 90 ntBASIC4.53□□□□□ -1.68
MSX1P28360 RNU6-899P-201ENST00000363947 107 ntBASIC4.53□□□□□ -1.68
MSX1P28360 RNU6-1310P-201ENST00000384153 107 ntBASIC4.53□□□□□ -1.68
MSX1P28360 RNU6-80P-201ENST00000384195 107 ntBASIC4.53□□□□□ -1.68
MSX1P28360 SNORA36A-201ENST00000384221 132 ntBASIC4.53□□□□□ -1.68
MSX1P28360 RNU2-54P-201ENST00000410299 190 ntBASIC4.53□□□□□ -1.68
MSX1P28360 RN7SKP61-201ENST00000410642 295 ntBASIC4.53□□□□□ -1.68
MSX1P28360 RNU2-52P-201ENST00000410680 190 ntBASIC4.53□□□□□ -1.68
MSX1P28360 AC091390.1-201ENST00000433904 331 ntBASIC4.53□□□□□ -1.68
MSX1P28360 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 179.5 ms