Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SNORA31.19-201ENST00000517079 126 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.32□□□□□ -1.72
COL8A1P27658 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.32□□□□□ -1.72
COL8A1P27658 MIR7853-201ENST00000584820 132 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 AC024220.1-201ENST00000603675 484 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.32□□□□□ -1.72
COL8A1P27658 AL139124.1-201ENST00000609123 421 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.32□□□□□ -1.72
COL8A1P27658 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
COL8A1P27658 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL8A1P27658 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
COL8A1P27658 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL8A1P27658 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL8A1P27658 AC068647.1-201ENST00000489539 2265 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL8A1P27658 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL8A1P27658 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL8A1P27658 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL8A1P27658 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL8A1P27658 AC018555.1-201ENST00000567548 1980 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
COL8A1P27658 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.31□□□□□ -1.72
COL8A1P27658 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
COL8A1P27658 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL8A1P27658 MIR208A-201ENST00000362287 71 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 Y_RNA.348-201ENST00000365403 103 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 Y_RNA.572-201ENST00000384757 98 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 SNORA26.5-201ENST00000391215 123 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC4.31□□□□□ -1.72
COL8A1P27658 AC245047.8-201ENST00000456455 284 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 NIP7P2-201ENST00000485801 544 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.31□□□□□ -1.72
COL8A1P27658 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.31□□□□□ -1.72
COL8A1P27658 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL8A1P27658 ENPP7P9-201ENST00000514456 627 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 RNU6-1061P-201ENST00000516530 99 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 Y_RNA.692-201ENST00000516627 105 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 RNA5SP143-201ENST00000516936 115 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 SCARNA20.4-201ENST00000516969 131 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 RNA5SP230-201ENST00000517039 122 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 MIR5688-201ENST00000580619 83 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 MIR4660-201ENST00000583549 74 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 AC006130.2-201ENST00000586202 326 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 AL121890.5-201ENST00000620848 304 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 AC027309.3-201ENST00000623419 351 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 MIR1245B-201ENST00000636115 69 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 AL596211.1-201ENST00000569873 2277 ntBASIC4.31□□□□□ -1.72
COL8A1P27658 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
COL8A1P27658 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL8A1P27658 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.31□□□□□ -1.72
COL8A1P27658 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL8A1P27658 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL8A1P27658 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL8A1P27658 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
COL8A1P27658 AC104623.2-202ENST00000623477 4002 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.3□□□□□ -1.72
COL8A1P27658 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.3□□□□□ -1.72
COL8A1P27658 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.3□□□□□ -1.72
COL8A1P27658 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
COL8A1P27658 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL8A1P27658 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.3□□□□□ -1.72
COL8A1P27658 RNU6-640P-201ENST00000363693 105 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 RNU6-1164P-201ENST00000364428 107 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 Y_RNA.287-201ENST00000364853 94 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 Y_RNA.333-201ENST00000365274 102 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 MIR487A-201ENST00000385009 80 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 MIR526A2-201ENST00000390198 65 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 AL355497.1-201ENST00000406262 551 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 CYCSP10-201ENST00000417973 294 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.3□□□□□ -1.72
COL8A1P27658 AL591623.2-201ENST00000449978 222 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC4.3□□□□□ -1.72
COL8A1P27658 AC091874.1-201ENST00000511402 339 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 AC090142.3-201ENST00000519012 385 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC4.3□□□□□ -1.72
COL8A1P27658 AP005432.2-201ENST00000608162 586 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.3□□□□□ -1.72
COL8A1P27658 SMG1P7-201ENST00000565246 2704 ntBASIC4.3□□□□□ -1.72
COL8A1P27658 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.3□□□□□ -1.72
COL8A1P27658 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.3□□□□□ -1.72
COL8A1P27658 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
COL8A1P27658 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.3□□□□□ -1.72
COL8A1P27658 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL8A1P27658 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL8A1P27658 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.29□□□□□ -1.72
COL8A1P27658 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
COL8A1P27658 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.29□□□□□ -1.72
COL8A1P27658 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.29□□□□□ -1.72
COL8A1P27658 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.29□□□□□ -1.72
COL8A1P27658 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 AC010329.5-201ENST00000623497 2174 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 RNU6-527P-201ENST00000363425 104 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 RNU6-873P-201ENST00000363833 107 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms