Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU1-73P-201ENST00000383971 164 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 RNU6-106P-201ENST00000384405 107 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 MIR548A1-201ENST00000385041 97 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 SNORA48.5-201ENST00000391143 135 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 MIR208B-201ENST00000401172 77 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 NDUFB4P4-201ENST00000404822 243 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 REREP1Y-201ENST00000422655 198 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 HMGN2P30-201ENST00000423237 256 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 TOMM22P2-201ENST00000430735 237 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 REREP2Y-201ENST00000439103 200 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 AC012308.1-201ENST00000451232 178 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 AC073073.1-201ENST00000493920 463 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.26□□□□□ -1.57
COL9A1P20849 RN7SKP276-201ENST00000516242 268 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 SNORA70.16-201ENST00000516390 95 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 SNORA31.16-201ENST00000516773 139 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.26□□□□□ -1.57
COL9A1P20849 MIR3138-201ENST00000585238 82 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 AL162713.1-201ENST00000604480 262 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 FTX_3.1-201ENST00000610451 147 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 AL138721.1-201ENST00000616756 179 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.26□□□□□ -1.57
COL9A1P20849 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
COL9A1P20849 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.25□□□□□ -1.57
COL9A1P20849 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL9A1P20849 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL9A1P20849 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
COL9A1P20849 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
COL9A1P20849 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
COL9A1P20849 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.25□□□□□ -1.57
COL9A1P20849 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL9A1P20849 AC092681.1-201ENST00000297369 291 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 DLEU2_6.3-201ENST00000340052 136 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 RNU1-108P-201ENST00000362556 161 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 SNORD72-201ENST00000390994 80 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 AL603914.1-201ENST00000401964 204 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.25□□□□□ -1.57
COL9A1P20849 AL691449.1-201ENST00000426570 421 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.25□□□□□ -1.57
COL9A1P20849 AC090525.1-201ENST00000479116 478 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 RN7SKP19-201ENST00000516016 252 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 RNU6-344P-201ENST00000516635 111 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 MRPL49P2-201ENST00000521066 465 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 AC009163.5-201ENST00000575421 637 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 MIR3136-201ENST00000583498 78 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 ARF4P1-201ENST00000605447 541 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 RNA5SP108-201ENST00000605921 117 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 SNORD11B-201ENST00000607707 90 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
COL9A1P20849 DLEU2_6.2-201ENST00000620994 136 ntBASIC5.25□□□□□ -1.57
COL9A1P20849 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.25□□□□□ -1.57
COL9A1P20849 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
COL9A1P20849 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
COL9A1P20849 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL9A1P20849 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
COL9A1P20849 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
COL9A1P20849 DNM1P47-203ENST00000571780 12667 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL9A1P20849 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL9A1P20849 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
COL9A1P20849 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
COL9A1P20849 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.24□□□□□ -1.57
COL9A1P20849 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
COL9A1P20849 NOL8P1-201ENST00000508336 3529 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
COL9A1P20849 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL9A1P20849 Y_RNA.348-201ENST00000365403 103 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 SNORA70F-201ENST00000384142 135 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 RNU6-19P-201ENST00000384718 107 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 RNU6-1275P-201ENST00000391087 107 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 RPS26P8-201ENST00000393490 348 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 RPS29P10-201ENST00000439197 166 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 RNA5SP154-201ENST00000516193 111 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 AP001880.2-201ENST00000538233 448 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 AC131055.1-201ENST00000584626 316 ntBASIC5.24□□□□□ -1.57
COL9A1P20849 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL9A1P20849 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.24□□□□□ -1.57
COL9A1P20849 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL9A1P20849 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.24□□□□□ -1.57
COL9A1P20849 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL9A1P20849 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.24□□□□□ -1.57
COL9A1P20849 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.24□□□□□ -1.57
COL9A1P20849 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.24□□□□□ -1.57
COL9A1P20849 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL9A1P20849 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC5.24□□□□□ -1.57
COL9A1P20849 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.24□□□□□ -1.57
COL9A1P20849 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
COL9A1P20849 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
COL9A1P20849 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL9A1P20849 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL9A1P20849 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
COL9A1P20849 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
COL9A1P20849 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms