Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 RNU4-54P-201ENST00000516428 129 ntBASIC0.3□□□□□ -2.36
CHKB-CPT1BH3BT56 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC0.3□□□□□ -2.36
CHKB-CPT1BH3BT56 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC0.3□□□□□ -2.36
CHKB-CPT1BH3BT56 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.3□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC0.3□□□□□ -2.36
CHKB-CPT1BH3BT56 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.3□□□□□ -2.36
CHKB-CPT1BH3BT56 AC098614.4-201ENST00000607601 462 ntBASIC0.3□□□□□ -2.36
CHKB-CPT1BH3BT56 AL355802.4-201ENST00000607635 548 ntBASIC0.3□□□□□ -2.36
CHKB-CPT1BH3BT56 AC108706.1-201ENST00000611053 297 ntBASIC0.3□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC00216-201ENST00000623548 1126 ntBASIC0.3□□□□□ -2.36
CHKB-CPT1BH3BT56 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 MIR605-201ENST00000385078 83 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AL133475.1-201ENST00000404414 305 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AL356967.1-201ENST00000406305 431 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC083875.1-201ENST00000419509 405 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 SNX2P2-201ENST00000424553 323 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 SNRPEP7-201ENST00000438350 220 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 GTF2IP13-201ENST00000438487 386 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 NDUFAF4P3-201ENST00000456468 525 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC134050.1-201ENST00000495088 933 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC008628.1-201ENST00000508663 265 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 RNA5SP121-201ENST00000516537 101 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AP003484.1-201ENST00000530974 250 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 RPS3AP4-201ENST00000555161 764 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC136619.2-201ENST00000563361 631 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 MIR4303-201ENST00000581299 66 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC005786.1-201ENST00000588553 154 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC034229.4-201ENST00000607861 441 ntBASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
CHKB-CPT1BH3BT56 AC138393.1-203ENST00000327086 343 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AC010099.3-201ENST00000423896 409 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AL096829.2-201ENST00000446582 742 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 SNORA3.4-201ENST00000515969 96 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 RN7SKP219-201ENST00000516825 296 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AC090142.3-201ENST00000519012 385 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AC087441.2-201ENST00000529141 262 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AC093519.1-201ENST00000566109 298 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AC095057.3-201ENST00000567102 1157 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 MIR3664-201ENST00000579074 99 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 BNIP3P24-201ENST00000593398 557 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AC107952.2-201ENST00000606048 486 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AC010133.1-201ENST00000615809 842 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 AL596245.1-201ENST00000618994 362 ntBASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.28□□□□□ -2.36
CHKB-CPT1BH3BT56 PCF11-AS1-201ENST00000602322 1516 ntBASIC0.28□□□□□ -2.37
CHKB-CPT1BH3BT56 RNU6-657P-201ENST00000383904 107 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 RNU6-482P-201ENST00000391068 107 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 SNORA17.3-201ENST00000391159 129 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 RAC1P8-201ENST00000427086 527 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 TIMM9P1-201ENST00000436122 256 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 HMGB3P12-201ENST00000438745 556 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 KATNBL1P3-201ENST00000443475 909 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AC104058.1-201ENST00000448028 297 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 SNORD124-201ENST00000459577 104 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AC116655.1-201ENST00000508324 901 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 MTCYBP40-201ENST00000509390 1135 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AC048346.1-201ENST00000510247 144 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 RNU6-548P-201ENST00000517083 115 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AC018630.3-201ENST00000542637 96 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AC022432.1-201ENST00000595739 310 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 VN1R82P-201ENST00000601481 356 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 AC130324.3-201ENST00000614165 542 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 MIR6134-201ENST00000617606 109 ntBASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.27□□□□□ -2.37
CHKB-CPT1BH3BT56 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC0.26□□□□□ -2.37
CHKB-CPT1BH3BT56 RNA5SP361-201ENST00000362686 118 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms