Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNU6-1214P-201ENST00000363650 109 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 RNU6-884P-201ENST00000363889 107 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 RNU6-342P-201ENST00000384521 104 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.92□□□□□ -2.1
CDX2Q99626 RPL21P24-201ENST00000413752 448 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.92□□□□□ -2.1
CDX2Q99626 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX2Q99626 HIGD1AP15-201ENST00000416198 280 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 RPL22P18-201ENST00000417197 377 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 USP9YP13-201ENST00000417797 480 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 ZNF90P2-204ENST00000419323 1075 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX2Q99626 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX2Q99626 ISCA1P1-201ENST00000426679 387 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 RPS15AP5-201ENST00000436276 388 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 SNRPEP9-201ENST00000436794 238 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 MTND2P22-201ENST00000444325 1033 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.92□□□□□ -2.1
CDX2Q99626 FABP5P15-201ENST00000453566 214 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 RNU7-59P-201ENST00000459101 61 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 SNORD11.1-201ENST00000459482 85 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC1.92□□□□□ -2.1
CDX2Q99626 AC109486.1-201ENST00000486833 374 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC107393.1-201ENST00000512403 346 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 MTND5P13-201ENST00000513046 1079 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.92□□□□□ -2.1
CDX2Q99626 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX2Q99626 SCARNA11.3-201ENST00000517276 130 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 BTF3P12-201ENST00000519620 469 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 MTND2P38-201ENST00000522536 667 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX2Q99626 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX2Q99626 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.92□□□□□ -2.1
CDX2Q99626 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX2Q99626 AC087241.2-201ENST00000535801 324 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.92□□□□□ -2.1
CDX2Q99626 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC1.92□□□□□ -2.1
CDX2Q99626 AC023050.2-201ENST00000544968 387 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX2Q99626 AC023824.2-201ENST00000566185 400 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.92□□□□□ -2.1
CDX2Q99626 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX2Q99626 MIR5002-201ENST00000584713 97 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC022022.2-201ENST00000602989 360 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AL022161.1-201ENST00000604390 213 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AL355472.4-201ENST00000610233 626 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AL589743.7-201ENST00000612637 233 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC112204.3-201ENST00000623822 332 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC012640.5-201ENST00000623897 319 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AL356596.1-201ENST00000624230 379 ntBASIC1.92□□□□□ -2.1
CDX2Q99626 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.92□□□□□ -2.1
CDX2Q99626 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.92□□□□□ -2.1
CDX2Q99626 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CDX2Q99626 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.91□□□□□ -2.1
CDX2Q99626 Y_RNA.169-201ENST00000363745 96 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 Y_RNA.205-201ENST00000364128 113 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 RNU4-40P-201ENST00000364351 143 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 RNU4-28P-201ENST00000364739 141 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 RNU6-1328P-201ENST00000410938 106 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC1.91□□□□□ -2.1
CDX2Q99626 AC010099.3-201ENST00000423896 409 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX2Q99626 CETN4P-201ENST00000432407 469 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 UBE2FP3-201ENST00000436366 524 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX2Q99626 AC098831.1-201ENST00000440661 216 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 MTATP6P26-201ENST00000445926 662 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 ATP5J2P3-201ENST00000451550 258 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AC098826.2-201ENST00000452011 651 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX2Q99626 AC010486.2-201ENST00000505572 483 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AC098591.2-201ENST00000510152 315 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.91□□□□□ -2.1
CDX2Q99626 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
CDX2Q99626 RNU5A-4P-201ENST00000516588 111 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AP004247.1-201ENST00000531556 1289 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX2Q99626 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX2Q99626 AC005498.1-201ENST00000592125 465 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AL161798.1-201ENST00000604630 131 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AL360085.1-201ENST00000604713 532 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 MTND4LP5-201ENST00000605152 292 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AC007038.2-201ENST00000608095 740 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 AC005332.10-201ENST00000612725 619 ntBASIC1.91□□□□□ -2.1
CDX2Q99626 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.91□□□□□ -2.1
CDX2Q99626 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.91□□□□□ -2.1
CDX2Q99626 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC1.91□□□□□ -2.1
CDX2Q99626 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX2Q99626 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.9□□□□□ -2.1
CDX2Q99626 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.9□□□□□ -2.1
CDX2Q99626 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CDX2Q99626 AC110491.1-201ENST00000562191 2010 ntBASIC1.9□□□□□ -2.11
CDX2Q99626 RNU6-750P-201ENST00000390946 107 ntBASIC1.9□□□□□ -2.11
CDX2Q99626 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.9□□□□□ -2.11
CDX2Q99626 AC078974.1-201ENST00000411597 223 ntBASIC1.9□□□□□ -2.11
CDX2Q99626 RPL17P12-201ENST00000413391 526 ntBASIC1.9□□□□□ -2.11
CDX2Q99626 AC009518.2-201ENST00000418056 731 ntBASIC1.9□□□□□ -2.11
CDX2Q99626 HMGB1P49-201ENST00000418882 569 ntBASIC1.9□□□□□ -2.11
CDX2Q99626 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.9□□□□□ -2.11
CDX2Q99626 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms