Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ARL5AP4-201ENST00000430731 512 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 TEX41-205ENST00000431734 529 ntTSL 4 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC016831.4-201ENST00000438302 307 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AL353748.1-201ENST00000440753 474 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 HMGN2P7-201ENST00000456186 273 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC090525.1-201ENST00000479116 478 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 RPL36AP41-201ENST00000493820 306 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 MTND1P19-201ENST00000511780 315 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 SNORA31.16-201ENST00000516773 139 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC027288.2-201ENST00000553028 243 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC021231.3-201ENST00000558497 370 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC015912.2-201ENST00000571053 181 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC091042.1-201ENST00000579213 173 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 MIR4300-201ENST00000581016 96 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC012433.1-201ENST00000588916 398 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AL138963.2-201ENST00000605137 226 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC073657.2-201ENST00000605661 303 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 BRDTP1-201ENST00000605735 677 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 FAM25E-202ENST00000608562 189 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 MIR6853-201ENST00000619642 74 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 SDR42E1P4-201ENST00000620894 481 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 LINC02555-201ENST00000563933 1951 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 MAPK10-263ENST00000641052 4307 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AL590240.1-201ENST00000334118 313 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 Y_RNA.60-201ENST00000362831 98 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 snoU2_19.2-201ENST00000363024 80 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 RNU6-1285P-201ENST00000363480 105 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 SNORA20.1-201ENST00000364790 130 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 UBBP2-201ENST00000376781 231 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 RNA5SP87-201ENST00000384155 118 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 MIR10B-201ENST00000385011 110 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 RNU6-1093P-201ENST00000391194 107 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 RNU1-139P-201ENST00000391307 165 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 HLFP1-201ENST00000402375 499 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 SNORD12B-201ENST00000410433 91 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 RNU6-1203P-201ENST00000410703 110 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AC140479.3-201ENST00000418944 1126 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AC245291.1-201ENST00000419501 328 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 BX679664.1-201ENST00000434429 253 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 MTND4LP30-201ENST00000454092 297 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AP000705.1-201ENST00000454567 350 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AL441985.1-201ENST00000457727 251 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 RNA5SP103-201ENST00000459503 118 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AC025465.3-201ENST00000510570 311 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 RN7SKP46-201ENST00000515942 234 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 RNU5B-3P-201ENST00000516601 115 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 DEFB108E-201ENST00000524692 240 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AC120057.2-201ENST00000571520 271 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 MIR4480-201ENST00000582492 71 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 AL078605.1-201ENST00000603529 500 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 MIR6820-201ENST00000611508 62 ntBASIC3.62□□□□□ -1.83
CCDC140Q96MF4 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC140Q96MF4 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 RNU6-529P-201ENST00000363383 104 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 RNU6-487P-201ENST00000365430 104 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 Y_RNA.552-201ENST00000384665 112 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 MIR549A-201ENST00000385268 96 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 RN7SKP267-201ENST00000410381 285 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 RN7SKP58-201ENST00000411010 305 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 Z74021.1-201ENST00000423610 407 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 AL591419.1-201ENST00000427423 339 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 AC004383.1-201ENST00000438135 289 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 RPS26P2-201ENST00000440331 348 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 AC096638.1-201ENST00000444678 216 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms