Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 FAM35DP-201ENST00000323387 2712 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.58□□□□□ -1.84
COL4A3Q01955 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
COL4A3Q01955 Y_RNA.210-201ENST00000364161 110 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 SNORA38.1-201ENST00000364172 131 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.58□□□□□ -1.84
COL4A3Q01955 RNU6-1026P-201ENST00000384465 108 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 RNU6-178P-201ENST00000384631 104 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 Y_RNA.577-201ENST00000384794 101 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 MIR1261-201ENST00000408659 82 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 PPP1R11P2-201ENST00000423543 382 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 HMGB1P27-201ENST00000431429 603 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 AC112492.4-201ENST00000456549 352 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 AC084357.1-201ENST00000473404 255 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 IGKV2-26-201ENST00000518305 343 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 AC008489.1-201ENST00000524271 483 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.58□□□□□ -1.84
COL4A3Q01955 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.58□□□□□ -1.84
COL4A3Q01955 MTND4LP5-201ENST00000605152 292 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 RNU6-85P-201ENST00000605989 107 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 HMGN2P28-201ENST00000606102 262 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 AL591516.1-201ENST00000611326 274 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 AC138627.2-201ENST00000624202 601 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC3.58□□□□□ -1.84
COL4A3Q01955 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 AC087190.4-201ENST00000574616 8334 ntBASIC3.58□□□□□ -1.84
COL4A3Q01955 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
COL4A3Q01955 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A3Q01955 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A3Q01955 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC3.57□□□□□ -1.84
COL4A3Q01955 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.57□□□□□ -1.84
COL4A3Q01955 Y_RNA.396-201ENST00000383949 103 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 RNU6-190P-201ENST00000384154 102 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 SNORA54-201ENST00000384281 123 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
COL4A3Q01955 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A3Q01955 AL603908.1-201ENST00000406098 201 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 RNU2-3P-201ENST00000410144 191 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 HMGB1P9-201ENST00000429856 646 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.57□□□□□ -1.84
COL4A3Q01955 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.57□□□□□ -1.84
COL4A3Q01955 CEACAMP4-201ENST00000457676 421 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.57□□□□□ -1.84
COL4A3Q01955 AC018437.1-201ENST00000492214 406 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 RNU2-53P-201ENST00000516257 147 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 RNU6-579P-201ENST00000516879 102 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 HMGB3P26-201ENST00000560051 582 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 MIR4273-201ENST00000582824 84 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 AL365434.2-201ENST00000607979 234 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.57□□□□□ -1.84
COL4A3Q01955 AC022149.2-201ENST00000621061 203 ntBASIC3.57□□□□□ -1.84
COL4A3Q01955 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.57□□□□□ -1.84
COL4A3Q01955 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A3Q01955 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC3.57□□□□□ -1.84
COL4A3Q01955 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
COL4A3Q01955 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A3Q01955 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC3.57□□□□□ -1.84
COL4A3Q01955 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.57□□□□□ -1.84
COL4A3Q01955 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A3Q01955 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.57□□□□□ -1.84
COL4A3Q01955 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A3Q01955 AC010615.1-201ENST00000594254 1764 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A3Q01955 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A3Q01955 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
COL4A3Q01955 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
COL4A3Q01955 RNU6-1155P-201ENST00000363554 107 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 Y_RNA.288-201ENST00000364854 92 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 RNU6-596P-201ENST00000365395 98 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 Y_RNA.552-201ENST00000384665 112 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 RNU6-713P-201ENST00000384761 107 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 MIR1302-6-201ENST00000408466 90 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 RN7SKP111-201ENST00000410349 271 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 RNA5SP247-201ENST00000411181 105 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 PGBD4P6-201ENST00000421501 610 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.56□□□□□ -1.84
COL4A3Q01955 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.56□□□□□ -1.84
COL4A3Q01955 BX276092.3-201ENST00000424182 230 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A3Q01955 RPL21P2-201ENST00000440049 481 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.56□□□□□ -1.84
COL4A3Q01955 RPS15AP34-201ENST00000487776 387 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 MTND3P25-201ENST00000509243 135 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 SNORA40.14-201ENST00000516543 86 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 Y_RNA.715-201ENST00000517082 110 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 RN7SKP234-201ENST00000517173 224 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 AC104576.1-201ENST00000524225 88 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 AC126177.3-201ENST00000551839 688 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.56□□□□□ -1.84
COL4A3Q01955 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.56□□□□□ -1.84
COL4A3Q01955 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.56□□□□□ -1.84
COL4A3Q01955 AC067852.4-201ENST00000590314 478 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 AC078899.3-201ENST00000599065 212 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 ELOCP5-201ENST00000604924 333 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms