Protein–RNA interactions for Protein: Q9UKI2

CDC42EP3, Cdc42 effector protein 3, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP3Q9UKI2 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC007560.1-201ENST00000426912 237 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 RPL21P91-201ENST00000429231 479 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AP000873.1-201ENST00000463987 400 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AK3P2-201ENST00000507976 429 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC010265.1-201ENST00000513509 211 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 OR5D17P-201ENST00000531492 978 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC023157.2-201ENST00000540596 141 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC006077.1-201ENST00000604746 343 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 RAC1P9-201ENST00000604990 392 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 MTND4LP5-201ENST00000605152 292 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AL159153.1-201ENST00000619688 317 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC027309.3-201ENST00000623419 351 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC112200.1-201ENST00000625015 234 ntBASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.67□□□□□ -1.82
CDC42EP3Q9UKI2 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 RNU6-428P-201ENST00000362942 107 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 Y_RNA.222-201ENST00000364264 102 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 Y_RNA.518-201ENST00000384552 113 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 MIR659-201ENST00000384963 97 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 MIR607-201ENST00000385241 96 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 SNORA69.1-201ENST00000390904 137 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 RNU6-700P-201ENST00000391043 107 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 Y_RNA.592-201ENST00000410274 109 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 RNA5SP39-201ENST00000411245 120 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 OR2AQ1P-201ENST00000451972 200 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 AL592156.1-201ENST00000508758 304 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 RNU6-377P-201ENST00000515965 102 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 RNU6-1143P-201ENST00000516125 104 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 MIR4444-1-201ENST00000581696 74 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 MIR4444-2-201ENST00000584390 74 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 AC011373.1-201ENST00000607270 237 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 AC140479.6-201ENST00000633535 357 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 USP8P1-201ENST00000494673 3183 ntBASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CDC42EP3Q9UKI2 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
CDC42EP3Q9UKI2 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CDC42EP3Q9UKI2 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CDC42EP3Q9UKI2 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
CDC42EP3Q9UKI2 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.82
CDC42EP3Q9UKI2 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 RNU6-227P-201ENST00000362865 103 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 RNU1-132P-201ENST00000364300 164 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 Y_RNA.288-201ENST00000364854 92 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 Y_RNA.447-201ENST00000384184 113 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 RNU6-72P-201ENST00000384285 79 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 Y_RNA.489-201ENST00000384410 101 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 RNU6-713P-201ENST00000384761 107 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 MT-TW-201ENST00000387382 68 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 MTCYBP2-201ENST00000407745 171 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 SNORA11.2-201ENST00000408318 127 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 RNU6ATAC-201ENST00000408749 126 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 RNA5SP494-201ENST00000410653 129 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 RNA5SP31-201ENST00000411144 127 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 RPL21P66-201ENST00000426566 466 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AC092423.1-201ENST00000430165 186 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 USP9YP16-201ENST00000430287 407 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 Z98949.2-201ENST00000440996 144 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 USP9YP23-201ENST00000455085 407 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 RNU7-169P-201ENST00000459456 61 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AC005921.1-201ENST00000510589 286 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 IGHV3-76-201ENST00000522465 295 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AC100770.1-201ENST00000532310 322 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AC090517.1-201ENST00000569307 266 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AC015912.2-201ENST00000571053 181 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AC005357.1-201ENST00000588399 301 ntBASIC3.65□□□□□ -1.83
CDC42EP3Q9UKI2 AC064801.1-201ENST00000612025 407 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms