Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 U6.105-201ENST00000637379 88 ntBASIC3.61□□□□□ -1.83
DKK3Q9UBP4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.61□□□□□ -1.83
DKK3Q9UBP4 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.61□□□□□ -1.83
DKK3Q9UBP4 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 DEFB108F-201ENST00000344638 222 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 RNU6-1252P-201ENST00000363054 104 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 RNU6-173P-201ENST00000364215 104 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 RNY4P36-201ENST00000391116 96 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 MIR450B-201ENST00000401182 78 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 MTCYBP4-201ENST00000401524 249 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 AL513331.1-201ENST00000411908 397 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 ATG3P1-201ENST00000419507 911 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 HMGB1P27-201ENST00000431429 603 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 AC236972.1-201ENST00000433225 199 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 AL591212.2-201ENST00000433923 257 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 RPL32P28-201ENST00000443577 397 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 RPL31P60-201ENST00000478450 367 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 AC079140.5-201ENST00000507882 310 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 RPL23AP94-201ENST00000512518 302 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 SNORD59.2-201ENST00000516873 68 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 COPS8P3-201ENST00000526024 482 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 MIR4790-201ENST00000577799 79 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 FAM60BP-201ENST00000578364 658 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 MIR4425-201ENST00000580572 84 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 CYP2C61P-201ENST00000604072 290 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 DUSP12P1-201ENST00000612874 516 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 AL359757.2-201ENST00000624309 274 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 MTND5P27-201ENST00000428871 1720 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 AC010733.2-201ENST00000589496 5702 ntBASIC3.6□□□□□ -1.83
DKK3Q9UBP4 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.6□□□□□ -1.83
DKK3Q9UBP4 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 MFSD8-233ENST00000641482 4860 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 RNU6-371P-201ENST00000364283 108 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 RNU6-128P-201ENST00000383976 107 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AL139397.2-201ENST00000404529 772 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 U3.39-201ENST00000408569 239 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 SKA2P1-201ENST00000425592 390 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AP000907.1-201ENST00000428428 510 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 SNAP23P1-201ENST00000433229 246 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AC005019.1-201ENST00000436455 431 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AC005741.1-201ENST00000511094 432 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 RN7SKP24-201ENST00000515888 284 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 RN7SKP83-201ENST00000516512 178 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 RN7SKP282-201ENST00000516824 299 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AP005639.2-201ENST00000527592 928 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
DKK3Q9UBP4 MIR5692C1-201ENST00000585309 91 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AC107294.3-201ENST00000609211 526 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AL110115.1-201ENST00000614396 364 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 FAM157A-202ENST00000615155 405 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AC084781.2-201ENST00000615568 161 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 AL360181.4-201ENST00000621752 134 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 MTND4LP32-201ENST00000636111 270 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 MTND4P27-201ENST00000450813 1354 ntBASIC3.59□□□□□ -1.83
DKK3Q9UBP4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
DKK3Q9UBP4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.59□□□□□ -1.84
DKK3Q9UBP4 ZNF519P1-201ENST00000449011 1626 ntBASIC3.59□□□□□ -1.84
DKK3Q9UBP4 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.58□□□□□ -1.84
DKK3Q9UBP4 AC006504.1-201ENST00000562493 3666 ntBASIC3.58□□□□□ -1.84
DKK3Q9UBP4 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
DKK3Q9UBP4 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
DKK3Q9UBP4 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.58□□□□□ -1.84
DKK3Q9UBP4 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.58□□□□□ -1.84
DKK3Q9UBP4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
DKK3Q9UBP4 RNU6-288P-201ENST00000363690 104 ntBASIC3.58□□□□□ -1.84
DKK3Q9UBP4 Y_RNA.395-201ENST00000383945 109 ntBASIC3.58□□□□□ -1.84
DKK3Q9UBP4 Y_RNA.482-201ENST00000384377 111 ntBASIC3.58□□□□□ -1.84
DKK3Q9UBP4 Y_RNA.534-201ENST00000384599 112 ntBASIC3.58□□□□□ -1.84
DKK3Q9UBP4 MIR548P-201ENST00000408336 84 ntBASIC3.58□□□□□ -1.84
DKK3Q9UBP4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.58□□□□□ -1.84
DKK3Q9UBP4 AC006989.1-201ENST00000427212 131 ntBASIC3.58□□□□□ -1.84
DKK3Q9UBP4 AC079780.1-201ENST00000428259 207 ntBASIC3.58□□□□□ -1.84
DKK3Q9UBP4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 150.7 ms