Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 SCARNA4-202ENST00000625402 129 ntBASIC4.68□□□□□ -1.66
CNTN3Q9P232 U2.22-201ENST00000636441 106 ntBASIC4.68□□□□□ -1.66
CNTN3Q9P232 USP8P1-201ENST00000494673 3183 ntBASIC4.68□□□□□ -1.66
CNTN3Q9P232 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CNTN3Q9P232 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 MAPK10-303ENST00000641324 3959 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 RNU6-50P-201ENST00000362356 103 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 RNU6-600P-201ENST00000362524 99 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 Y_RNA.54-201ENST00000362766 105 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 RPL21P40-201ENST00000428586 483 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 AL445305.1-201ENST00000432577 575 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 AL136097.1-201ENST00000456945 913 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 AC034236.1-201ENST00000469891 373 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 AL592156.1-201ENST00000508758 304 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 PARP4P3-201ENST00000510265 317 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 RNA5SP49-201ENST00000516450 115 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 RNA5SP165-201ENST00000517142 115 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 MRPL49P2-201ENST00000521066 465 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 AC012603.1-201ENST00000606424 528 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 FAM27D1-201ENST00000612308 341 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 AC090617.7-201ENST00000623952 126 ntBASIC4.67□□□□□ -1.66
CNTN3Q9P232 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.67□□□□□ -1.66
CNTN3Q9P232 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNTN3Q9P232 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
CNTN3Q9P232 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC139713.2-215ENST00000641428 5037 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CNTN3Q9P232 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.66□□□□□ -1.66
CNTN3Q9P232 MIR383-201ENST00000362257 73 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 Y_RNA.143-201ENST00000363520 106 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 Y_RNA.200-201ENST00000364018 102 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 RNU6-336P-201ENST00000364891 107 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 RNU4-9P-201ENST00000364951 139 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 Y_RNA.581-201ENST00000391017 97 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC098614.2-201ENST00000426040 255 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 NUTF2P7-201ENST00000453086 375 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 RN7SL41P-201ENST00000476144 297 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC139453.3-201ENST00000493276 369 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC010265.1-201ENST00000513509 211 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC025884.1-201ENST00000556034 378 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC090617.3-201ENST00000573670 475 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 AC060766.3-201ENST00000591442 263 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.66□□□□□ -1.66
CNTN3Q9P232 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CNTN3Q9P232 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CNTN3Q9P232 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CNTN3Q9P232 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CNTN3Q9P232 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.66□□□□□ -1.66
CNTN3Q9P232 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.65□□□□□ -1.66
CNTN3Q9P232 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
CNTN3Q9P232 HSPA8P1-201ENST00000425843 1833 ntBASIC4.65□□□□□ -1.66
CNTN3Q9P232 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
CNTN3Q9P232 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
CNTN3Q9P232 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.65□□□□□ -1.66
CNTN3Q9P232 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.66
CNTN3Q9P232 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
CNTN3Q9P232 RNU1-14P-201ENST00000362759 152 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 RNU1-35P-201ENST00000362782 153 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 RNU6-1266P-201ENST00000362794 105 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 Y_RNA.274-201ENST00000364714 101 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 Y_RNA.277-201ENST00000364754 102 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 SNORA70C-201ENST00000384538 135 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CNTN3Q9P232 AL139156.1-201ENST00000412785 841 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 AC004975.1-201ENST00000428733 208 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 RPS6P12-201ENST00000432491 726 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 AC006026.2-201ENST00000457376 180 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 snoU13.30-201ENST00000458951 104 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 RNA5SP519-201ENST00000516480 119 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 RNA5SP73-201ENST00000516744 108 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 AC100770.1-201ENST00000532310 322 ntBASIC4.65□□□□□ -1.67
CNTN3Q9P232 TRAV28-201ENST00000557548 323 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 164.7 ms