Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC024619.4-201ENST00000580924 316 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 MIR4769-201ENST00000584126 77 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC098848.2-201ENST00000588023 330 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC093648.1-201ENST00000623546 606 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
UPF3AQ9H1J1 ZNF680P1-201ENST00000436625 1469 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 RNU6-223P-201ENST00000362830 107 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 RNY4P14-201ENST00000363656 96 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 RNU6-1284P-201ENST00000363701 100 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC114491.1-201ENST00000416095 246 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC137499.1-201ENST00000427602 88 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 RPL36AP6-201ENST00000435770 321 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 HMGB3P12-201ENST00000438745 556 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 RPL23AP20-201ENST00000447965 421 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC092989.1-201ENST00000481235 277 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC069439.1-201ENST00000494739 167 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC010493.1-201ENST00000513479 292 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AP003034.1-201ENST00000534621 422 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AL359212.1-201ENST00000556608 614 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 MED28P6-201ENST00000558776 231 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC010620.2-201ENST00000600135 313 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 AC103810.6-201ENST00000606708 136 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 SNHG22-203ENST00000617833 660 ntBASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.77□□□□□ -1.97
UPF3AQ9H1J1 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 RNU6-799P-201ENST00000363567 107 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 RNU6-1097P-201ENST00000363586 107 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 RNY1P12-201ENST00000364251 105 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 SMIM11P1-201ENST00000369586 178 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 Y_RNA.390-201ENST00000383932 102 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 RNU6-14P-201ENST00000384630 106 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AL139397.2-201ENST00000404529 772 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 RPL19P1-201ENST00000411635 428 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AC003685.2-201ENST00000422795 395 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 MED13P1-201ENST00000428342 171 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 TIMM9P3-201ENST00000428659 274 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 MTND1P2-201ENST00000430604 821 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AL606489.2-201ENST00000433886 234 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 RPL23AP45-201ENST00000476406 468 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 RNU6-835P-201ENST00000516974 104 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 RNU6-410P-201ENST00000517006 107 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AC134698.4-201ENST00000523451 826 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AL512360.1-201ENST00000555346 234 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 RPL23AP84-201ENST00000571193 464 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 MIR1273D-201ENST00000577266 86 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AC008752.3-201ENST00000588113 712 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AF038458.1-201ENST00000588406 262 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AC012507.3-201ENST00000603556 477 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AP001330.4-201ENST00000604350 154 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AC093788.1-201ENST00000609356 927 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 AL355810.1-201ENST00000614629 552 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 MAPK10-322ENST00000641485 4530 ntBASIC2.76□□□□□ -1.97
UPF3AQ9H1J1 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 Y_RNA.9-201ENST00000362354 101 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 RNU6-1120P-201ENST00000362988 108 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 RNU6-1085P-201ENST00000363576 107 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 RNA5SP456-201ENST00000364002 114 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 SNORD114-30-201ENST00000364448 72 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 RNU6-908P-201ENST00000410160 94 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 RNA5SP38-201ENST00000410750 119 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms