Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 RPS27AP10-201ENST00000496103 208 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 CCDC34P1-201ENST00000507441 517 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 RNU6-1038P-201ENST00000516516 104 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC007536.1-201ENST00000533382 349 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AL157687.1-201ENST00000554853 619 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AL138976.2-201ENST00000563989 694 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 MIR4424-201ENST00000585257 86 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AP000907.4-201ENST00000604143 237 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC005000.2-201ENST00000605468 310 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
NKX3-1Q99801 MIR8057-201ENST00000620957 69 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.59□□□□□ -2
NKX3-1Q99801 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
NKX3-1Q99801 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
NKX3-1Q99801 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.59□□□□□ -2
NKX3-1Q99801 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.58□□□□□ -2
NKX3-1Q99801 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
NKX3-1Q99801 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.58□□□□□ -2
NKX3-1Q99801 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
NKX3-1Q99801 AC022336.2-201ENST00000568966 2538 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 NACAP2-201ENST00000318548 624 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
NKX3-1Q99801 RNU6-1303P-201ENST00000364841 107 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 CD24P4-201ENST00000382840 243 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 Y_RNA.453-201ENST00000384223 109 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 RNU6-658P-201ENST00000384606 106 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 SNORA16.2-201ENST00000390991 127 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 SNORD70.1-201ENST00000391007 85 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 MIR888-201ENST00000401186 77 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 RNU4-46P-201ENST00000410818 138 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AC023141.4-201ENST00000412031 328 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.58□□□□□ -2
NKX3-1Q99801 AC022018.1-201ENST00000430685 241 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.58□□□□□ -2
NKX3-1Q99801 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.58□□□□□ -2
NKX3-1Q99801 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.58□□□□□ -2
NKX3-1Q99801 SNRPFP3-201ENST00000457792 225 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 SCARNA18-201ENST00000459004 134 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 RPL21P93-201ENST00000480465 489 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 RN7SL499P-201ENST00000481141 276 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.58□□□□□ -2
NKX3-1Q99801 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.58□□□□□ -2
NKX3-1Q99801 FAM92A1P2-202ENST00000504766 877 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 MTND3P25-201ENST00000509243 135 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.58□□□□□ -2
NKX3-1Q99801 RNU6-572P-201ENST00000516724 80 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 RN7SKP282-201ENST00000516824 299 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 RN7SKP272-201ENST00000516988 232 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 SNORA31.19-201ENST00000517079 126 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.58□□□□□ -2
NKX3-1Q99801 AC109635.3-201ENST00000529536 185 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.58□□□□□ -2
NKX3-1Q99801 BNIP3P6-201ENST00000549284 499 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AL118558.2-201ENST00000556294 238 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.58□□□□□ -2
NKX3-1Q99801 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.58□□□□□ -2
NKX3-1Q99801 MIR548AC-201ENST00000585049 88 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AC012119.1-201ENST00000603184 222 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AL162413.1-201ENST00000603198 110 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AL020991.1-201ENST00000612314 373 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.58□□□□□ -2
NKX3-1Q99801 AC018692.3-201ENST00000623929 123 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 MIR6733-201ENST00000635723 61 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 AC024614.3-201ENST00000637860 256 ntBASIC2.58□□□□□ -2
NKX3-1Q99801 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.58□□□□□ -2
NKX3-1Q99801 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.58□□□□□ -2
NKX3-1Q99801 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
NKX3-1Q99801 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.58□□□□□ -2
NKX3-1Q99801 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.58□□□□□ -2
NKX3-1Q99801 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.58□□□□□ -2
NKX3-1Q99801 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.58□□□□□ -2
NKX3-1Q99801 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.57□□□□□ -2
NKX3-1Q99801 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
NKX3-1Q99801 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
NKX3-1Q99801 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 Y_RNA.89-201ENST00000363031 102 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 RNU6-534P-201ENST00000364877 106 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 RNU6-38P-201ENST00000384085 107 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 SNORA54-201ENST00000384281 123 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 RNU6-1179P-201ENST00000384667 107 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 SNORD15B-201ENST00000384714 146 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.57□□□□□ -2
NKX3-1Q99801 SNORA48.5-201ENST00000391143 135 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.57□□□□□ -2
NKX3-1Q99801 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 RPS4XP7-201ENST00000406274 780 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AL592148.1-201ENST00000413568 445 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms