Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MTND5P14-201ENST00000441481 1267 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.22□□□□□ -2.37
HSPG2P98160 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.22□□□□□ -2.37
HSPG2P98160 NIFKP6-201ENST00000598115 845 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.22□□□□□ -2.37
HSPG2P98160 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC0.22□□□□□ -2.37
HSPG2P98160 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC0.22□□□□□ -2.37
HSPG2P98160 Y_RNA.18-201ENST00000362461 102 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 MIR10B-201ENST00000385011 110 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.22□□□□□ -2.37
HSPG2P98160 AP002371.1-201ENST00000463604 433 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 AC015849.6-201ENST00000605454 474 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 OR5H6-203ENST00000642105 978 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 MTND5P30-201ENST00000452896 1731 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 MIR101-1-201ENST00000362265 75 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 Y_RNA.453-201ENST00000384223 109 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 MIR153-2-201ENST00000385225 87 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 MTCO3P12-201ENST00000416718 547 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC0.22□□□□□ -2.37
HSPG2P98160 FGF7P5-201ENST00000441829 291 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 MTND2P19-201ENST00000449129 1012 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0.22□□□□□ -2.37
HSPG2P98160 AC099513.1-201ENST00000490423 301 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC0.22□□□□□ -2.37
HSPG2P98160 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.22□□□□□ -2.37
HSPG2P98160 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.22□□□□□ -2.37
HSPG2P98160 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC0.22□□□□□ -2.37
HSPG2P98160 MIR3921-201ENST00000577308 85 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 AC115085.1-201ENST00000588924 229 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 MIR5739-201ENST00000619803 80 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 MTND4P16-201ENST00000466108 1367 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.22□□□□□ -2.37
HSPG2P98160 MIR92A1-201ENST00000385233 78 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC0.22□□□□□ -2.37
HSPG2P98160 SFR1P2-201ENST00000421841 730 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC0.22□□□□□ -2.37
HSPG2P98160 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC0.22□□□□□ -2.37
HSPG2P98160 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
HSPG2P98160 COX7A2P2-201ENST00000505291 250 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 AC079140.2-201ENST00000506193 142 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.22□□□□□ -2.37
HSPG2P98160 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC0.22□□□□□ -2.37
HSPG2P98160 MIR3126-201ENST00000577443 74 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 AC106900.2-201ENST00000604994 317 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 AP003399.1-201ENST00000637534 361 ntBASIC0.22□□□□□ -2.37
HSPG2P98160 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.21□□□□□ -2.38
HSPG2P98160 RNU6-45P-201ENST00000384471 107 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AL354941.1-201ENST00000438600 464 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC0.21□□□□□ -2.38
HSPG2P98160 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
HSPG2P98160 RNU6-362P-201ENST00000516736 90 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.21□□□□□ -2.38
HSPG2P98160 AC008562.1-201ENST00000521763 330 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.21□□□□□ -2.38
HSPG2P98160 AC019288.1-201ENST00000557918 224 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.21□□□□□ -2.38
HSPG2P98160 MIR548Y-201ENST00000582739 110 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.21□□□□□ -2.38
HSPG2P98160 AC097372.5-201ENST00000623665 376 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AC134026.1-201ENST00000623249 2239 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC0.21□□□□□ -2.38
HSPG2P98160 RNA5SP258-201ENST00000362750 119 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 RNU6-748P-201ENST00000384648 107 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 EDDM3CP-201ENST00000415977 425 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 EIF4EP2-201ENST00000422816 654 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AC024082.2-201ENST00000434771 238 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC0.21□□□□□ -2.38
HSPG2P98160 MTCO1P53-201ENST00000441633 699 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 UBL5P1-201ENST00000507979 193 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 RNA5SP112-201ENST00000515937 99 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 MIR548AX-201ENST00000580117 73 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 OR1M4P-201ENST00000589199 287 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AL669831.4-202ENST00000590817 238 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC0.21□□□□□ -2.38
HSPG2P98160 AL009028.1-201ENST00000604895 802 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC0.21□□□□□ -2.38
HSPG2P98160 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC0.21□□□□□ -2.38
HSPG2P98160 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC0.21□□□□□ -2.38
HSPG2P98160 RNU1-124P-201ENST00000363861 145 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 RNU6-1035P-201ENST00000384477 107 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 RNU6-30P-201ENST00000384561 107 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 RNU6-220P-201ENST00000390919 107 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 RNU6-1328P-201ENST00000410938 106 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AC013410.2-201ENST00000422627 201 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.21□□□□□ -2.38
HSPG2P98160 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.21□□□□□ -2.38
HSPG2P98160 AC004062.1-201ENST00000509926 645 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.21□□□□□ -2.38
HSPG2P98160 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.21□□□□□ -2.38
HSPG2P98160 AC136628.3-201ENST00000521868 290 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.21□□□□□ -2.38
HSPG2P98160 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC0.21□□□□□ -2.38
HSPG2P98160 BNIP3P25-201ENST00000596023 559 ntBASIC0.21□□□□□ -2.38
HSPG2P98160 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.21□□□□□ -2.38
HSPG2P98160 SNORA29-201ENST00000384183 140 ntBASIC0.2□□□□□ -2.38
HSPG2P98160 RNU6-72P-201ENST00000384285 79 ntBASIC0.2□□□□□ -2.38
HSPG2P98160 U3.20-201ENST00000390909 217 ntBASIC0.2□□□□□ -2.38
HSPG2P98160 RNU6-821P-201ENST00000390995 107 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms